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Hi,
I am using stringtie to merge 32 samples (de novo). I used this command :
stringtie --merge -p 4 $LISTE -m 100 -o $OUT'merged.gtf'
Surprisingly, the merged.gtf contains some kind of 'nested' lo…
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Issue by @Anuragksingh, moved from SciLifeLab#763
> Hello,
> I had some doubts over ascat.
> It would be really helpful if you can provide some insights about that.
> Can we use the available…
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**Hi, thanks in advance for the help. I tried plotting some bigwig files, successfully creating a track plot with a not very wide viewing window:**
```r
> loci_names
SYMBOL …
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I have been trying to map UCE loci to a reference genome using the ./CURE GeneRegion command and it keeps failing. The program runs without problem, but none of the UCEs map to exons. I am using an an…
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Hi there,
Neat function to convert gl2colony - thanks! I managed to produce .dat file and get COLONY to run analysis. However, it immediately flagged 'Offspring ID, 4670, not found in the offsprin…
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### What happened?
Bug reported in https://discuss.hail.is/t/table-index-returning-none/3507/4
Using files provided by user:
```
> gwas = hl.read_table("gwas_filtered.ht")
> loci_to_gene = hl.i…
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Hi,
I have noticed a problem with the function read.Structure, which doubled the number of row of the DataMatrix (YOUR_LIST_NAME$DataMatrix) compared to the number of individuals (as in YOUR_LIST_…
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Dear professor，
We conducted an analysis using MTAG. Overall, the correlation between the effect sizes from MTAG and the original GWAS is quite good, r=0.67; however, we found that the effect sizes o…
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I ran PIRATE with 322 genomes (gff files) as input, but the file indicates 321 genomes. Is there any way to investigate why the count decreased from 322 to 321? The confirmation details are as follow…
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Hi,
first of all, thanks for providing such a detailed description of the pipeline used to estimate viral domestication. I have sequenced the genome of a sawfly (Diprion pini) and thought I check if …