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I am trying to run Masurca 3.2.8 on our new SLURM based cluster. I am assembling 40 Gb of Nanopore reads plus Illumina PE and Jump libraries. Masurca ran for a few hours and completed the read corre…
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Hi, the script proves to be useful to put the assembled contigs together and reorganize their orientation, but I'm not clear about how it work. I understand the principle that (after splitting contigs…
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I keep receiving the following error while trying to install MaSurCa on CentOS 6
configure: Detected BOOST_ROOT; continuing with --with-boost=/opt/MaSuRCA-4.0.3/global-1/include/boost
checking for…
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Hi,
I am trying to run Masurca for Hybrid Assembly of ONT with illumina short reads, I am getting this below error after running for some time
Fri Feb 26 11:59:35 UTC 2021] Output prefix mr.41.17…
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`brew install` fails:
(The list is based on the high priority list)
- [x] delly (https://github.com/Homebrew/homebrew-science/pull/5412)
- [ ] discovardenovo (https://github.com/bcgsc/orca/issues/1…
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Hi,
I used the interactive version to make my custom filtering and then save the list (full json to use it for filtering the fasta assembly and the reads separately). Filtering for the assembly com…
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The last line of install.sh in 4.0.3 is -
```
(cd Flye && make && cp -a ../Flye $DEST);
```
The last copy turns out to throw the following error -
```
cp: '../Flye' and '/root/MaSuRCA-4.0.3/Fly…
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I have a similar issue as #58 but without any buffer overflow in ufasta. First, the error message:
```
[Di 29. Jan 14:15:23 CET 2019] Joining
[Di 29. Jan 14:15:32 CET 2019] Gap consensus
Error: …
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Hi,
I would like to assemble the plant mitochondrial genome from the whole genome data. The expected total genome size is 1.7 GB Including chloroplast, mitochondrial and nuclear genome). But the mit…
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Hi there!
I recently installed v4.0.3 and tried running the new quick run of MaSuRCA. It seemed fine until it failed with the following error:
```
super reads file not found or size zero, you c…