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Lims Issue
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For definitions of headings below see [Basic Concepts](https://atlas.scilifelab.se/infrastructure/lims/basic_concepts/).
**Workflow:** Microbial WGS v7, TWIST v8, WGS…
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Dear all
I have problem with the visualization the composition of microbial community with Phinch, the output of the tool "Make.biom" as shown below
 has a lot of useful reports, especially [MyTaxa Scan…
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Hi,
I have been working with m2m to do some microbial community metabolic interaction analysis and I have stumble with and issue. When trying to run the mincom minimal_community.mincom() function o…
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Ghenu et al (2022) evaluated methods of fitting microbial growth curves.
Based on a conversation with the lead author, epigrowthfit could probably contribute a lot here if we:
* make it possible…
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All of the data is here (84G total):
http://genomics.lbl.gov/supplemental/bigfit/
The numerical relative growth data would have to be converted - growth vs no growth, via eg thresholding.
Just …
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Dear authors,
I really like your packages, and have used it to analysis my data.
I would like to recommend two models, which both are derived from transition state theory. Perhaps you could con…
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- [x] summarise base R: syntax, save, load data David
- [x] tidyverse section
~microsensor data~
~microsensor plotting section~
- [x] microbial growth data: play with data in tidyR, regression, da…
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Hello! I'm working on a project to create a knowledge graph of the wastewater treatment microbiome. We have inferred the association between the microbes from abundance tables and created the networks…
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Cross link to #672
There has been much discussion about a ``microbiome`` class, the latest being in #805.
Resulting from [pco/issues/22](https://github.com/PopulationAndCommunityOntology/pco/iss…