Knowledge-Graph-Hub kg-microbe issues

Knowledge-Graph-Hub / kg-microbe

https://knowledge-graph-hub.github.io/kg-microbe/index.html

BSD 3-Clause "New" or "Revised" License

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issues

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More cleaning and commenting Uniprot transform + merge

#194 hrshdhgd closed 1 hour ago
0
Removed \n and quotes from labels

#193 hrshdhgd closed 1 day ago
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ingest BacDive "sample type" data

#192 realmarcin opened 1 day ago
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link Bacdive isolation source categories to each other to represent hierarchy

#191 realmarcin opened 1 day ago
1
Trying to clean labels from BacDive data

#190 hrshdhgd closed 1 day ago
0
link Bacdive isolation source categories to each other to represent hierarchy

#189 bsantan closed 18 hours ago
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Isolation source fixes

#188 bsantan closed 2 days ago
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Culture medium existed as a list of dicts and dicts

#187 hrshdhgd closed 5 days ago
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include sample type as isolation source

#186 bsantan closed 5 days ago
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KG- microbe hub hierarchy

#185 hrshdhgd opened 6 days ago
1
update branch with master

#184 bsantan closed 1 week ago
0
validate Omnimicrobe text mined data

#183 realmarcin opened 1 week ago
0
ingest PREGO knowledgebase

#182 realmarcin opened 1 week ago
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master into kg-microbe-host

#181 bsantan closed 1 week ago
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IJSEM phenotype db

#180 realmarcin opened 1 week ago
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update all carbon substrate edges to use "consumes"

#179 bsantan closed 1 week ago
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Add name-taxonomy-classification information

#178 hrshdhgd closed 1 week ago
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ingest microbeatlas environments

#177 realmarcin opened 3 weeks ago
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transformed and tmp files results for isolation source

#176 bsantan closed 4 weeks ago
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isolation sources for all bacdive ncbitaxon entities

#175 bsantan closed 4 weeks ago
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Bacdive media fix

#174 realmarcin opened 4 weeks ago
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locations from MicrobeAtlas

#173 realmarcin closed 3 weeks ago
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Add UPA pathway to go edges

#172 bsantan closed 1 month ago
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Update README.md

#171 realmarcin closed 1 month ago
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UniRef90 transform

#170 hrshdhgd opened 1 month ago
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Add `assay:` prefix instead of `API_XX`

#169 hrshdhgd closed 1 month ago
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Kg microbe host

#168 bsantan opened 1 month ago
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Bacdive fixes

#167 hrshdhgd closed 1 month ago
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mix of knowledge_source and primary_knowledge_source for edges files, even for ontologies

#166 realmarcin opened 2 months ago
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Updates to Rhea and EC ingest

#165 bsantan closed 2 months ago
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fix issue of getting "EC: " nodes

#164 bsantan closed 2 months ago
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Fix protein name parsing

#163 bsantan closed 2 months ago
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Refactor `provided_by` to `primary_knowledge_source` in edges file.

#162 hrshdhgd closed 2 months ago
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Normalized `provided_by` column

#161 hrshdhgd closed 2 months ago
0
unipathways post processing transform

#160 bsantan closed 2 months ago
0
thermobase

#159 realmarcin opened 3 months ago
0
Astrobiology Habitable Environments Database (AHED)

#158 realmarcin opened 3 months ago
0
Add strain nodes

#157 hrshdhgd closed 3 months ago
0
get latest master

#156 bsantan closed 3 months ago
0
get latest master

#155 bsantan closed 3 months ago
1
ingest some ATCC genome entry fields

#154 realmarcin opened 3 months ago
0
Added `medium-type` Category and re-ran transform

#153 hrshdhgd closed 3 months ago
0
Fine tuning

#152 hrshdhgd closed 3 months ago
0
Don't put generic code in this repo

#151 cmungall opened 3 months ago
0
TrEMBL transform.

#150 hrshdhgd closed 2 months ago
0
Uniprot2s3 transform new

#149 bsantan closed 2 months ago
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import RO relation for biolink predicate from biolink model

#148 realmarcin opened 3 months ago
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Added labels

#147 hrshdhgd closed 3 months ago
0
BactTraits ingest

#146 hrshdhgd closed 3 months ago
0
Is it possible/recommended to get the microbial traits at the Genus level?

#145 sayalaruano opened 3 months ago
1