Open hrshdhgd opened 5 months ago
KG Name | Traits | Uniprot Subset | UPA | Rhea | EC | GO | MONDO | HPO | CTD |
---|---|---|---|---|---|---|---|---|---|
KG-Microbe | Condensed traits, BacDive, BactoTraits | None | X | X | X | X | |||
KG-Microbe-Function | Condensed traits, BacDive, BactoTraits | Trait taxa | X | X | X | X | |||
KG-Microbe-Host | Condensed traits, BacDive, BactoTraits | Trait taxa, Human | X | X | X | X | |||
KG-Microbe-Biomedical | Condensed traits, BacDive, BactoTraits | Trait taxa, Human, Disbiome, PD Metagenomics | X | X | X | X | X | X | X |
I urge everyone in Monarch to think of modular strategies. Read the documentation on OBO, base files, etc
If we agree on smaller granular units (e.g. bacdive, Madin et al taxa), plus repeated units (e.g. uniprot-function-taxon-X) then we just assembly by catmerge
(see also slack)