pip install poetry
poetry install
git clone https://github.com/Knowledge-Graph-Hub/kg-microbe.git
cd kg-microbe
poetry run kg download
: This will download the resources needed for this project.poetry run kg transform
: This transforms the resources into knowledge graphs (KGs).poetry run kg merge
: This merges all transformed graphs above.In order to be able to make KG releases on this repository, you'll need:
GH_TOKEN
export GH_TOKEN = XXXX
or add it to your ~/.bash_profile
or ~/.bashrc
file.
Please remember to run poetry run tox
before every commit to make sure the code you commit is error-free.
This cookiecutter project was developed from the kg-cookiecutter template and will be kept up-to-date using cruft.