-
We would like to discuss with ChEBI:
a) glycan and related annotation submission
b) updating their carbohydrate ontology definitions
c) gnome integration
-
We have two different CHEBI's for location of:
CHEBI:33290
CHEBI:24632
One of these is in the opposite orientation:
urn:uuid:787caa6b-dd79-479c-b730-cb19a11ac3b2 CHEBI:24632 biolink:location…
-
Currently, the `response` inputs to ARAX ranker in [ARAX_query.py](https://github.com/RTXteam/RTX/blob/d37f15a73bfb8fea1826634d23254b787cc9445e/code/ARAX/ARAXQuery/ARAX_query.py#L856) contain "virtual…
-
It is currently possible to select the color for the reserved modified base codes, but all of the other values are lumped into the same "other" color code. At nanopore we are working on the release of…
-
ChEBI is a fast evolving ontology and having to wait until a restart can impede curation efforts.
-
https://wwwdev.ebi.ac.uk/chebi/beta/CHEBI:53020
It seems to add the number 2 in front of the formula which needs fixing.
The Mass, InChI and InChIKey calculated are different to the ones genera…
-
```
docker run --rm -it aksw/rpt "integrate" "SELECT * { SERVICE { ?p ?o } }"
```
The times are 2,1 s for 5MB and 2,8 für 980 MB. So for 5MB it takes nearly as long as for 1GB, whereas one one…
-
nrnivmodl correctly compiles each of
- `USEION na READ ena WRITE ina REPRESENTS [CHEBI:29101]`
- `USEION na READ ena WRITE ina REPRESENTS CHEBI:29101`
correctly only looks for ONTOLOGY_IDs afte…
-
Hi Adnan,
hope you are doing well.
We have dozens if not more classes of anionic gangliosides in ChEBI and Rhea; but these are not currently classified as gangliosides, nor lipids. This issue …
-
I am checking the exposure-chebi.tsv file for the patterns.
Should we make a separate file for the eo/peco classes that map to a chebi role? and have separate yaml file for those with a nested defi…