Open realmarcin opened 4 months ago
@hrshdhgd
@realmarcin : What do you want to name this transform
This is row 1 of the txt file. Give me the nodes and edges you see here. Please provide full example like it would look in a nodes or edges file. (full row with headers)
{
"Habitat":"\"freshwater (river, lake, pond)\"",
"IJSEM year":"2008",
"article doi":"10.1099/ijs.0.65700-0",
"16S rDNA accession number":"60.2",
"DNA GC content (mol%)":"DQ987877",
"oxygen preference":"aerobic",
"mean length (microns)":"1.05",
"mean width (microns)":"0.7",
"motility":"\"motile, but unspecified structure\"",
"spore production":"not indicated",
"Metabolism assays":"\"catalase positive, H2S production, indole production, nitrate reduction to nitrite, oxidase positive\"",
"Genus name":"Halorubrum",
"species name":"luteum",
"strain name":"CGSA15",
"pH optimum for growth":"9.75",
"pH range at which growth occurred":"7.5-10.5",
"temperature optimum for growth (degC)":"35",
"temperature range at which growth occurred (degC)":"17-41",
"optimal NaCl concentration for growth (%)":"24.07",
"NaCl concentration range at which growth occurred (%)":"14.5-30.16",
"pigment production":"yes",
"cell shape":"not indicated",
"cell aggregation":"not indicated",
"article first page":"1705",
"culture collection codes":"CGMCC=1.6783|CECT=7303",
"Sole carbon substrate use":"\"glucose, lactose, maltose, mannitol, mannose, sorbitol\"",
"genome accession number":"",
"gram status":"negative",
"\"If \\'other\\' was chosen above, please enter a habitat below\"":"",
"The paper included Biolog results":"No"
}
https://figshare.com/articles/dataset/International_Journal_of_Systematic_and_Evolutionary_Microbiology_IJSEM_phenotypic_database/4272392?file=6994457