issues
search
Knowledge-Graph-Hub
/
kg-microbe
https://knowledge-graph-hub.github.io/kg-microbe/index.html
BSD 3-Clause "New" or "Revised" License
14
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
ERROR:root:Failed to download: https://w3id.org/biopragmatics/resources/rhea/rhea.json
#144
sayalaruano
closed
3 months ago
2
CURIE refactor -- from pathways:/metabolism: to trophic_type:
#143
realmarcin
closed
3 months ago
1
Update with master
#142
bsantan
closed
3 months ago
1
ingest bugbase phenotypes and predictions
#141
realmarcin
opened
3 months ago
0
ingest BugSigDB
#140
realmarcin
opened
3 months ago
0
BactoTraits & Uniprot TrEMBL format transforms
#139
hrshdhgd
closed
3 months ago
0
Added keyword nodes
#138
hrshdhgd
closed
3 months ago
0
get latest rhea changes
#137
bsantan
closed
3 months ago
0
RHEA mappings
#136
hrshdhgd
closed
3 months ago
0
deleting stray nb
#135
realmarcin
closed
3 months ago
0
Make summary
#134
realmarcin
closed
3 months ago
0
New run
#133
hrshdhgd
closed
3 months ago
0
ingest Names4Life
#132
realmarcin
opened
3 months ago
0
refactor ECOCORE to PATO terms
#131
realmarcin
opened
4 months ago
0
BacDive resource files
#130
hrshdhgd
closed
4 months ago
0
uniprot transform changes
#129
bsantan
closed
3 months ago
1
Assays
#128
hrshdhgd
closed
4 months ago
0
Summaries
#127
realmarcin
closed
4 months ago
0
filter out viruses from NCBI Taxonomy 'unclassified'
#126
realmarcin
opened
4 months ago
1
Prefix refactor
#125
hrshdhgd
closed
4 months ago
0
Update README.md
#124
realmarcin
closed
4 months ago
0
Update README.md
#123
realmarcin
closed
4 months ago
0
Update README.md
#122
realmarcin
closed
4 months ago
0
Update README.md
#121
realmarcin
closed
4 months ago
0
Update README.md
#120
realmarcin
closed
4 months ago
0
Update README.md
#119
realmarcin
closed
4 months ago
0
Fixes #117
#118
hrshdhgd
closed
4 months ago
0
Typo in 'branched' shape from traits data
#117
realmarcin
closed
4 months ago
0
Reference proteome addition
#116
bsantan
closed
3 months ago
1
Get reference proteome organism id's from Uniprot.
#115
bsantan
closed
4 months ago
0
ingest the EC hierarchy
#114
realmarcin
opened
4 months ago
3
Add to parallel code
#113
hrshdhgd
closed
4 months ago
0
Accommodate pagination
#112
hrshdhgd
closed
4 months ago
0
increasing size of uniprot return
#111
realmarcin
closed
4 months ago
1
look at FermentationExplorer data integration
#110
realmarcin
opened
4 months ago
0
Create UniProt_s3_dump.yml
#109
hrshdhgd
closed
4 months ago
0
Uniprot sourcename fix
#108
bsantan
closed
4 months ago
2
Use GH workflow to populate Uniprot data into an S3 bucket
#107
hrshdhgd
closed
4 months ago
0
Code refactor
#106
hrshdhgd
closed
5 months ago
2
Revert "Uniprot"
#105
hrshdhgd
closed
5 months ago
0
use Taxallnomy to complete taxonomic lineages
#104
realmarcin
opened
5 months ago
0
Update merge.yaml
#103
bsantan
closed
3 months ago
1
Adding ingests for Metanetx, Rhea, MONDO, GO-plus instead of GO, HP.
#102
bsantan
closed
3 months ago
1
Uniprot empty queries patch
#101
bsantan
closed
5 months ago
0
Update download_utils.py
#100
bsantan
closed
5 months ago
1
one more line for cache
#99
realmarcin
closed
5 months ago
0
uniprot cache fixes
#98
realmarcin
closed
5 months ago
0
Naming fix
#97
bsantan
closed
3 months ago
1
NCBITaxon file ncbitaxon_removed_subset.json is not downloaded before Uniprot api is queried
#96
bsantan
opened
5 months ago
1
Update download_utils.py
#95
bsantan
closed
5 months ago
0
Previous
Next