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Knowledge-Graph-Hub
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kg-microbe
https://knowledge-graph-hub.github.io/kg-microbe/index.html
BSD 3-Clause "New" or "Revised" License
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Update download_utils.py
#95
bsantan
closed
5 months ago
0
download does not create data/raw/uniprot_genome_features path
#94
realmarcin
closed
5 months ago
1
aligning uniprot paths
#93
realmarcin
closed
5 months ago
0
lower case uniprot paths
#92
realmarcin
closed
5 months ago
0
Paths&blank files fix
#91
bsantan
closed
5 months ago
0
Summaries
#90
realmarcin
closed
5 months ago
0
Summaries
#89
realmarcin
closed
5 months ago
0
Uniprot
#88
bsantan
closed
5 months ago
0
unmatched BacDive taxa vs NCBITaxon
#87
realmarcin
opened
6 months ago
0
add transpoter hierarchy from TCDB
#86
realmarcin
opened
7 months ago
0
consider MBROLES for metabolite roles
#85
realmarcin
opened
7 months ago
0
Feba exploration
#84
hrshdhgd
closed
5 months ago
0
NER for unmatched terms
#83
hrshdhgd
closed
7 months ago
0
expanded feature set
#82
realmarcin
closed
7 months ago
0
make edits
#81
realmarcin
closed
7 months ago
0
custom summary and nb for GRAPE
#80
realmarcin
closed
8 months ago
0
Updated KGX to latest version
#79
hrshdhgd
closed
8 months ago
0
BugFix: Some terms had extra spaces that prevented CHEBI match
#78
hrshdhgd
closed
8 months ago
0
new nb with GRAPE viz
#77
realmarcin
closed
8 months ago
0
Remove CHEBI pruning from the KG and use entirely
#76
hrshdhgd
closed
8 months ago
0
More improvements
#75
hrshdhgd
closed
8 months ago
0
nb paths, new summaries in ./scripts
#74
realmarcin
closed
8 months ago
0
Upgrade `kg-microbe` to follow the cookiecutter.
#73
hrshdhgd
closed
8 months ago
0
generate NCBITaxon SQLite
#72
realmarcin
opened
8 months ago
0
add ROBOT NCBITaxon slim at OBO Foundry
#71
realmarcin
opened
8 months ago
0
RIKEN media
#70
realmarcin
opened
8 months ago
0
additional media properties, possibly obsolete
#69
realmarcin
opened
8 months ago
0
sources of microbial media types
#68
realmarcin
opened
8 months ago
0
sources of microbial culturing media
#67
realmarcin
opened
9 months ago
0
strains and annotations from ATCC
#66
realmarcin
opened
9 months ago
0
review MicrobeAnnotator approach with KOFamscan
#65
realmarcin
opened
1 year ago
0
ingest UniProt reference proteomes + SwissProt
#64
realmarcin
opened
1 year ago
0
Uniprot&metanetx
#63
bsantan
closed
8 months ago
1
Bump cryptography from 39.0.0 to 39.0.1
#62
dependabot[bot]
closed
10 months ago
0
ingest protraits
#61
realmarcin
opened
1 year ago
0
ingest BacDive growth assay results
#60
realmarcin
opened
1 year ago
0
Changed setup docs
#59
hrshdhgd
closed
1 year ago
0
ingest dbBact data
#58
realmarcin
opened
1 year ago
0
Install multi-indexer during Jenkins run
#57
caufieldjh
closed
1 year ago
0
Jenkins build error: call to multi-indexer not working
#56
caufieldjh
closed
1 year ago
0
Merge file name fixes
#55
caufieldjh
closed
1 year ago
0
Jenkins build error: can't find merged_graph_stats.yaml
#54
caufieldjh
closed
1 year ago
0
Fixes for TypeError in transforms when writing to file
#53
caufieldjh
closed
1 year ago
0
TypeError in TraitsTransform due to Series when str expected
#52
caufieldjh
closed
1 year ago
1
Produce CHEBI JSON before doing TraitsTransform
#51
caufieldjh
closed
1 year ago
0
Build fails due to chebi.owl not found
#50
caufieldjh
closed
1 year ago
0
Fixes for transforms
#49
caufieldjh
closed
1 year ago
0
Build process fails due to missing argument for transform function
#48
caufieldjh
closed
1 year ago
0
Refresh: dependencies, Poetry, workflows, and cleanup
#47
caufieldjh
closed
1 year ago
1
Repair build errors due to ModuleNotFoundError of numpy
#46
caufieldjh
closed
1 year ago
1
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