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Knowledge-Graph-Hub
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kg-microbe
https://knowledge-graph-hub.github.io/kg-microbe/index.html
BSD 3-Clause "New" or "Revised" License
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Produce CHEBI JSON before doing TraitsTransform
#51
caufieldjh
closed
1 year ago
0
Build fails due to chebi.owl not found
#50
caufieldjh
closed
1 year ago
0
Fixes for transforms
#49
caufieldjh
closed
1 year ago
0
Build process fails due to missing argument for transform function
#48
caufieldjh
closed
1 year ago
0
Refresh: dependencies, Poetry, workflows, and cleanup
#47
caufieldjh
closed
1 year ago
1
Repair build errors due to ModuleNotFoundError of numpy
#46
caufieldjh
closed
1 year ago
1
Bring graph build process up to date with KG-Hub standards
#45
caufieldjh
closed
1 year ago
0
Ingest ProGenomes3
#44
realmarcin
opened
1 year ago
0
Ingest BacDive
#43
realmarcin
opened
1 year ago
0
Ingest FusionDB
#42
realmarcin
opened
1 year ago
0
ingest METABOLIC genomic source data and trait predictions
#41
realmarcin
opened
2 years ago
0
ingest BactoTraits
#40
realmarcin
opened
2 years ago
0
Inspect data and sources for PREGO
#39
realmarcin
opened
2 years ago
0
Ingest The Microbe Directory
#38
realmarcin
opened
2 years ago
0
Ingest distribution of pathobionts across 12 skin sites
#37
realmarcin
opened
2 years ago
0
ingest Web of Microbes environment-metabolite change-microbe associations
#36
realmarcin
opened
2 years ago
0
ingest microbe-drug interactions sources
#35
realmarcin
opened
2 years ago
1
Ingest global microbial gene biogeography
#34
realmarcin
opened
2 years ago
0
Ingest gutMEGA
#33
realmarcin
opened
2 years ago
0
Rename example to data source
#32
hrshdhgd
closed
3 years ago
0
Sphinx sources addition
#31
hrshdhgd
closed
3 years ago
0
Sphinx sources addition
#30
hrshdhgd
closed
3 years ago
1
Sphinx sources addition
#29
hrshdhgd
closed
3 years ago
0
The automated enums should be replaced with curated values
#28
cmungall
opened
3 years ago
0
Ingest Weissman et al human microbiome taxa microbial trait data
#27
realmarcin
opened
3 years ago
1
Update kg-microbe using latest version of KGX
#26
hrshdhgd
closed
3 years ago
1
removed extra dependencies and update linkml
#25
hrshdhgd
closed
3 years ago
1
Make schemas of sources more explicit
#24
cmungall
closed
3 years ago
4
pinned biolinkml to 1.5.8
#23
hrshdhgd
closed
3 years ago
1
Jenkins first stab
#22
hrshdhgd
closed
3 years ago
0
Change biolinkml dependency to linklml
#21
wdduncan
closed
3 years ago
1
traits not showing up in docs
#20
cmungall
opened
3 years ago
0
Update README.md
#19
cmungall
closed
3 years ago
0
add notebooks for pivoting data
#18
wdduncan
closed
3 years ago
0
NER for chemicals aka carbon substrates in trait table
#17
realmarcin
closed
2 years ago
8
Adding trait schema
#16
cmungall
closed
3 years ago
0
NER for chemicals and pathways
#15
hrshdhgd
opened
3 years ago
1
Define schemas for sources and include semantic enums in the schema
#14
cmungall
opened
3 years ago
1
trait table schema
#13
cmungall
closed
3 years ago
0
Ingest Disbiome microbiome data
#12
realmarcin
opened
3 years ago
1
Doc using sphinx
#11
hrshdhgd
closed
3 years ago
0
trait, qualities, characteristics
#10
wdduncan
opened
3 years ago
0
ingest gene knockout data from LBL microbial fitness experiments
#9
realmarcin
opened
3 years ago
1
add support for Jenkins builds/pushing to S3
#8
justaddcoffee
closed
3 years ago
1
Annotate biolink-model with subset tags for microbe subset
#7
cmungall
opened
3 years ago
0
ingest microbe taxon to taxon edges from mondo
#6
cmungall
opened
3 years ago
0
map pathways column in big trait table
#5
cmungall
opened
3 years ago
5
Map cell_shape in big trait table
#4
cmungall
opened
3 years ago
6
map metabolism / use of oxygen (aerobic etc) column in big trait table
#3
cmungall
closed
3 years ago
8
ingest trait table data from
#2
realmarcin
closed
3 years ago
3
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