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Knowledge-Graph-Hub / kg-microbe

https://knowledge-graph-hub.github.io/kg-microbe/index.html
BSD 3-Clause "New" or "Revised" License
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Updates to Rhea and EC ingest #165

Closed bsantan closed 2 months ago

bsantan commented 2 months ago

Fixed issues with Rhea, RheaMapper, and EC ingest:

  1. Rhea ontology and Rhea pyobo ingest will not include direction relationships because they are already included in inverse triples (i.e. directional reaction subclassOf bidirectional reaction)
  2. Rhea pyobo ingest will not include CHEBI, GO, Uniprot, or EC relationships because they are already covered by EC, Uniprot ingests. The code is there if we choose to include these
  3. EC ingest will not include Uniprot relationships because they are already covered byUniprot ingest. The code is there if we choose to include these