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@mattodd @dmitrij176 @fantasy121 @Wilson-Lm
To keep track of the writing, wilson had prepared a google docs for the paper. We added the last analysis in but the chemistry is lacking. I know we did n…
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Hi,
I've had this issue cropping up in some of my dmr's but not consistently.
I'm looping through each of my paired samples and each chromosome reference (human T2T), with different pileups (one u…
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Hello,
I would like to perform an enrichment analysis with the following data:
`target_genes` - a vector of gene names corresponding to the tested set
`motif_rankings` - the loaded database `…
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MultiGPS is now on main. It is cutting edge binding site finder that analyzes multiple samples at once and performs differential binding analysis and motif search in one go. It can be used for analysi…
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Modify the TX model so that the activity changes every time, keep the number of neighbors constant. Preferably assign the activity as a function the amount of money.
## Data
- [ ] data from jan…
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Hello,
Thank you for this excellent tool! It is working very nicely on HiSeq/MiSeq data generated from amplicon sequencing of a non-model organism.
I wonder, after stutter filtering, is there …
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Hi,
We ran the example dataset with StrA and StrB and then compared the results for case-control to the original reads and it appears the copy number estimate is maybe a little underestimated. Per…
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Hello, thanks for this great tool !!!
I try to redo the [10x multiome pbmc Tutorial](https://scenicplus.readthedocs.io/en/latest/pbmc_multiome_tutorial.html#Motif-enrichment-analysis-using-pycistarge…