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Grandeur finished with errors (see attached): 1.) ValueError - only 1 label for 39 samples; 2). snp matrices were all 0's.
[End of Grandeur TB nextflow log.txt](https://github.com/UPHL-BioNGS/Gran…
DrB-S updated
11 months ago
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原文地址[ 流行病學的因果推論(Causal inference in Epidemiology) ](http://statisticbyjerry.blogspot.tw/2014/01/causal-inference-in-epidemiology.html)
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Hi Jody,
I am trying to run tb-profiler on a SLURM HPC but I haven't been able to make any progress with setting up the database.
When I run `tb-profiler update_tbdb` I get the following:
[10…
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The landing page should list some statistics about bakrep, e.g. dataset count, count of unique taxa, dataset size. This can be extended once it is clear which stats are relevant or not. For the beginn…
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After World War II, antibiotics were considered "wonder drugs", since they were easy cures for what had been intractable ailments. To learn which drug worked most effectively for which bacterial infec…
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Can MAPLE be run on bacteria? We tried running MAPLE on a diff variant file we converted from the SNPs and deletions from our VCF files originally made by aligning whole genome sequencing reads of _My…
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Bactopia was failing for me on the minimer step and mash is producing the error
`mash: error while loading shared libraries: libgsl.so.25: cannot open shared object file: No such file or directory`
…
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### Summary
We have partnered with [BioModels](https://www.ebi.ac.uk/biomodels/) at [EMBL-EBI](https://www.ebi.ac.uk/) (Hinxton) to explore potential ways to incorporate Ersilia's models into well-es…
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- [x] 'suppression by virus of host gene expression' >> host transcription shut-off
& children
- [x] 'suppression by virus of host mRNA processing'
- [x] 'suppression by virus of host transcripti…
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Hello There,
I have two questions to ask:
a. I am working with wastewater samples data and want to see presence of ARG in the metagenome samples. Which method I shall use either RGI main or RGI bw…