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Using the following command:
```shell
docker run --platform linux/amd64 -v $(pwd):/data:rw chambm/pwiz-skyline-i-agree-to-the-vendor-licenses:latest wine msconvert ./sample_file.d --64 --zlib --mz…
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I have cloned comet and compiled successfully on May/06.
1.
I tried to build a peptide index with the -i option from the human proteome but comet failed. I wanted to generate non-tryptic peptides …
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I was running spectramerge and I found this error that lead to no output file being created. It looks like an unhandled cvParam stopped the writing of the output file. This file worked on the smoot…
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@sureshhewabi:
These are the first projects we should convert:
- [ ] https://www.ebi.ac.uk/pride/archive/projects/PXD000561
- [ ] https://www.ebi.ac.uk/pride/archive/projects/PXD000865
- [ ]…
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At the moment, filtered data is stored as images only. There is no option at the moment to convert it back into mzXML or mzML files (at least for images containing more than a single map).
This conve…
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Hey, I'm having an issue running DIA-NN with an mzML input file converted from Thermo DIA Raw file. I'm using a spectral library generated by DIA-NN with `--gen-spec-lib` (which was successful). I als…
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Hi Vadim,
I recently forgot to destagger my raw files during mzml conversion. I fixed this now and both results seem to be very comparable when it comes to IDs.
Is there a difference for DIA-NN …
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The raw data file import generates an mzML with only the last m/z isolation step. Usually mzML has multiple precursor ions sorted by MS level. See the snap below for MS3 from .raw.
@tomas-pluskal do …
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Hi,
I am using DIA-NN 1.8.1 in Windows 11 Pro with 13th Gen Intel(R) Core(TM) i7-13700 (processors 16, threads 24) for DIA analysis of 51 Thermo raw data files. First attempts were successful explo…
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### Basic information
* My operating system: macOS
* My MZmine version: 3.0.54-beta
* Input file: [peak/P4_Data/5C3_RC3_01_5370.mzXML from MSV000079398](https://massive.ucsd.edu/ProteoSAFe/datase…