bigbio nf-workflows issues

bigbio / nf-workflows

Repository of Nextflow+BioContainers workflows

GNU General Public License v2.0

14 stars 8 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

First draft of the clustering benchmark

#30 jgriss opened 2 years ago
0
Added draft for MSFragger/FragPipe workflow

#29 jgriss closed 3 years ago
0
[Error] Invalid value for parameter -d: user.fasta (file does not exist)

#28 Jokendo-collab closed 4 years ago
7
Added IDfree nextflow

#27 mwalzer closed 5 years ago
0
Dockerised the python commands

#26 sureshhewabi closed 5 years ago
0
Copy raw files from directory

#25 sureshhewabi closed 5 years ago
0
container bug fix

#24 sureshhewabi closed 5 years ago
0
file extension case sentivity

#23 sureshhewabi closed 5 years ago
1
profile as a parameter

#22 sureshhewabi closed 5 years ago
0
Fix bug with metadata extraction from raw files

#21 sureshhewabi opened 5 years ago
0
correct metadata path

#20 sureshhewabi closed 5 years ago
0
code improvements

#19 sureshhewabi closed 5 years ago
0
rename variables

#18 sureshhewabi closed 5 years ago
0
First projects to Convert to mzML with the pipeline.

#17 ypriverol opened 5 years ago
3
Config with profile

#16 sureshhewabi closed 5 years ago
0
Update metadata pipeline local update

#15 sureshhewabi closed 5 years ago
0
New library for psm/peptide statistics.

#14 ypriverol opened 5 years ago
2
The PIA container should be updated

#13 ypriverol opened 5 years ago
0
the current tide workflow mzidentml is not valid

#12 ypriverol opened 5 years ago
2
Create Python script to support central config file

#11 jgriss opened 5 years ago
1
Native usage of Tide

#10 jgriss closed 5 years ago
1
Addresses #7: Adapted search to use SearchGUI + Comet

#9 jgriss closed 5 years ago
0
Release a new version of the cluster mgf exporter from mztab/mzidentml and the mgf

#8 ypriverol opened 5 years ago
0
Pipeline of renalysis move search engines to SearchGUI.

#7 ypriverol closed 5 years ago
4
Pipeline of reanalysis with Xtandem and MSGF+ out of memory.

#6 ypriverol opened 5 years ago
2
Move the example of the reanalysis to A better example from Peptideshacker

#5 ypriverol closed 5 years ago
1
Fixed X!Tandem xml issue.

#4 jgriss closed 5 years ago
0
Removed X!Tandem output filtering and added channel for X!Tandem XML

#3 jgriss closed 5 years ago
0
Included spectral-clustering workflow in README

#2 jgriss closed 5 years ago
0
New workflows

#1 jgriss closed 5 years ago
0