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Running `amypad centiloid` CLI subcommand fails unless `MATLAB` platform is found in the current environment/system. See below,
```
(amypet) user@host:/# amypet centiloid --glob-MRI *.nii.gz --glob…
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Hi -- I'm getting the error below when running FMRIPREP. I can't consistently reproduce it, but it happened on about 9 out of 50 participants. Any ideas? Thanks and Happy New Year!
```
Node: fmrip…
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It would be awesome to have a simple `upload_to_neurovault` command line tool that takes a nifti file and a minimal set of metadata.
- Minimal config file stored in the home directory. It could includ…
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Hi @mattcieslak,
I pulled `0.19.0` and am testing it. SynthSeg is still crashing as it was in #598. A quick check of the error file suggests that the threads are still inheriting --omp-nthreads (se…
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The scripts init_preprocessing and init_recon_models copy nifti (nii.gz) files.
The simple copy should be replaced by a call to change the orientation of images from 'neurological' to 'radiological'.…
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Hey! This data release is awesome! Thanks for releasing all this data with the detailed metadata!
I have been building this dataset: https://github.com/ieee8023/covid-chestxray-dataset
I would …
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Somehow, this WGLMakie example makes everything stutter like crazy, even on a fast PC:
```julia
using WGLMakie, FileIO, NIfTI, ImageTransformations
WGLMakie.activate!()
brain = restrict(niread…
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Hi all,
I'm hoping you can help me clear something up. A colleague in my lab wanted to run Freesurfer on some data for an analysis. I have been advocating for an in-lab workflow that includes BIDS-Ap…
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**Describe the bug**
xcpEngine combined with fmriprep 20.2.0rc1.
I cannot get normally preprocessed *resisualized.nii.gz.
It must be related with the change of regressor names from confounds_regr…
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I'm hoping that this is just a failure on my part to understand how some of the pre-processing works.
I ran fMRIPrep v. 1.4.1 on my resting state data. The following are images of the `func/*T1w_b…