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It was noticed that in VCell models that were exported to SBML-OMEX, spatial results seemed to be weird. Compared to their VCML counterparts, the results did not seem to match up, nor did the results …
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---
id: pysces
version: 1.2.1
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_PySCeS/2d97929994747fd30b5684393bb850839955b5eb/biosimulators.json
specificationsPatch:
…
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https://run.biosimulations.org/runs/new
The old page and the new page have the same problems; this is a proposed improvement, not a new thing introduced by the redesign.
Basically, there's entir…
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---
id: vcell
version: 7.5.0.127
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.5.0.127/biosimulators.json
specificationsPatch:
version: 7.5.0.127
image:
url: ghcr…
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---
id: vcell
version: 7.5.0.121
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.5.0.121/biosimulators.json
specificationsPatch:
version: 7.5.0.121
image:
url: ghcr…
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# Issue
Currently it is not possible to access variables in models based on model composition.
This is a general problem of composed models where part of the model XML definition is in external fil…
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---
id: copasi
version: 4.42.284
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_COPASI/4c8cbc8b6c0462d3d6eb49212b0494616b816970/biosimulators.json
specificationsPatch…
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---
id: vcell
version: 7.5.0.108
specificationsUrl: https://github.com/virtualcell/vcell/releases/download/7.5.0.108/biosimulators.json
specificationsPatch:
version: 7.5.0.108
image:
url: ghcr…
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### Simulation tool
---
id: smoldyn
version: "2.73"
specificationsUrl: https://github.com/ssandrews/Smoldyn/blob/master/biosimulators.json
specificationsPatch:
version: "2.73"
validateImage: …
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### Simulation tool
---
id: biosimulators-smoldyn
version: "2.73"
specificationsUrl: https://raw.githubusercontent.com/ssandrews/Smoldyn/810cabce43cf8cb59485e375dd7fd1e9f7468aa0/biosimulators.js…