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I tried to run `legofit` with the `-t 64 -1 -d 0 -S 5000` options, but many of the jobs in my job arrays failed and Torque PBS error logs show backtraces like these:
```
backtrace depth: 17
dosta…
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qsub offers a job array option to submit multiple jobs with a single qsub on a single script. The jobs are parameterized using the PBS_ARRAYID. What is interesting about this is that the job array has…
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_From [bjp...@unimelb.edu.au](https://code.google.com/u/114579938881809136597/) on 2012-02-07T17:43:03Z_
It would be good for torque jobs to support the "module load" command, and for it to be mentio…
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Hi!
I want to reconstruct a HPRC graph with HG002, and using the command `cactus-pangenome ./js-grch38 ./hprc-v1.1-mc.seqfile --outName hprc-v1.1-mc-grch38 --outDir hprc-v1.1-mc-grch38 --reference GR…
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```
I have a PBS cluster, and i hope it will support PBS soon
```
Original issue reported on code.google.com by `sf.to...@gmail.com` on 31 Mar 2013 at 1:36
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```
I have a PBS cluster, and i hope it will support PBS soon
```
Original issue reported on code.google.com by `sf.to...@gmail.com` on 31 Mar 2013 at 1:36
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`parallelly::availableCores()` returns the number of cores available for multicore processing. R itself provides `parallel::detectCores()` for this. There is also the `mc.cores` option (default to e…
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Exception thrown on pipeline launch, seems to be a Caper problem (get same output when running caper without input JSON). Running on SLURM cluster with pipeline v1.8.0.
**Caper configuration file**…
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### Description of the bug
When running `nf-core/sarek 3.0.2` with `--cf_ploidy "2,3,4"` `controlfreec` runs and produces output but the `makeGraph.R` script to plot the results crashes, as it expect…
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Let's use this issue / thread to troubleshoot what looks like `rna.rsem_count` crashing compute nodes. I'll start off by adding my notes from the past related to this.
BTW, whenever you see "I w…