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I've been running into an issue where running the Kinship function, I run into this error message.
```
ArgumentError: The pedigree data file does not contain a field
labeled Person or Individual…
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the file path in JSON file should be more fixable
example:
"/home/yindong/R/x86_64-pc-linux-gnu-library/4.0/simer/extdata/05others/pedigree.txt" should be replaced by "${users r path}/simer/extdata/…
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Dear developers,
I would like to express my gratitude for providing such a useful tool, mpMap2. I am currently working on constructing a linkage map for a 16-parents MAGIC population that was gener…
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test_plink for PLINK
a. binary PLINK output
b. binary output + input
c. pedigree
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Hi
In my output from somalier on 4 related individuals (illumina wgs data), i do not get any pedigree inference, as described in https://github.com/brentp/somalier/wiki/pedigree-inference
What am I …
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Hi,
I'm trying to use the RVS code and am having difficulty with learning how to enter in the relevant sequencing data for the affected members of the pedigree. What would be the code for such a func…
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There is a feature in Diabetes.csv named Diabetes Pedigree Function (pedi), and I searched its introduction as below
> A particularly interesting attribute used in the study was the Diabetes Pedigr…
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I stumbled on a weird plotting artifact that I can't quite figure out. Despite no evidence that Y and unkF2 were ever a couple (no relation data, no Y-unkF2 sired offspring), they appear as a mated pa…
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I am trying to use somalier to confirm matches between tumor and normal samples from the same patient. `somalier extract` works fine for both .bam files using `sites.hg19.vcf`.
The trouble is with …
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Tthe pedigree simulation code seems not to produce "unary" nodes for the intermediate nodes in the tree sequence, so even if a lineage goes through a known node, this information is lost. For instance…