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brentp
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somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
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Somalier with pooled parents
#136
tetedange13
opened
1 month ago
3
`Argument list too long' on 90k samples running ancestry
#135
shukwong
closed
1 month ago
1
Reading .somalier binary files - how is the SNP order determined?
#134
Austin-s-h
closed
2 months ago
2
chrX sites count
#133
AinaMontalban
opened
3 months ago
0
Scaled mean depth on X - how to calculate?
#132
parkjooyoung99
closed
5 months ago
1
[error] SIGSEGV: Illegal storage access. (Attempt to read from nil?) Segmentation fault (core dumped) (
#131
egenomics
opened
6 months ago
14
sm1.somalier and no other output
#130
methionine23
closed
6 months ago
5
Inference questions
#129
solcos
opened
7 months ago
0
Extracted genotypes format?
#128
lvclark
closed
7 months ago
2
IBS1 count
#127
rgve
opened
8 months ago
0
Relatedness color pattern issue in plot
#126
mirgin01
opened
8 months ago
6
Why this is a male?
#125
solcos
closed
9 months ago
1
How sex is inferred
#124
solcos
opened
9 months ago
1
sex check
#123
equinne5
closed
9 months ago
6
Add bioconda to readme
#122
johanneskoester
closed
10 months ago
0
Failing to run find-sites
#121
johanneskoester
closed
10 months ago
10
SIGSEGV: Illegal storage access. (Attempt to read from nil?)
#120
pamelaxu213
opened
10 months ago
2
Re-use of inferred parent names in large families
#119
Awtum
opened
10 months ago
1
[Question]: difference between sites.hg38.vcf.gz and sites.hg38.rna.vcf.gz
#118
tamuanand
closed
11 months ago
2
Legend results in relatedness plot
#117
solcos
closed
11 months ago
2
Sex QC for one sample
#116
solcos
closed
10 months ago
7
bam files without `@RG` tag
#115
mschubert
closed
1 year ago
4
No pedigree inference in samples from same family
#114
mjlarsen
opened
1 year ago
1
Relate Killed?
#113
kevwilhelm95
opened
1 year ago
4
convert somalier format to VCF/PED
#112
adigenova
opened
1 year ago
2
Add argument to select AF/AN field for find-sites
#111
Balthasar-eu
closed
1 year ago
1
Sites file for metylation data
#110
GWW
closed
1 year ago
2
SIGSEGV: Illegal storage access. (Attempt to read from nil?) during Somalier relate
#109
jlac
opened
1 year ago
10
Clarification in relate command across genome builds
#108
alexiswl
opened
1 year ago
9
sites.vcf for chm13v2 (T2T) reference
#107
kpalin
opened
1 year ago
5
How're `gt_depth_mean` and `depth_mean` calculated?
#106
SHuang-Broad
opened
1 year ago
18
Correlating the TSV columns with HTML
#105
SHuang-Broad
closed
1 year ago
3
Infer siblings with only shared father
#104
matthdsm
closed
1 year ago
2
Inconsistent ancestry predictions between Somalier and Peddy
#103
mpj5142
opened
1 year ago
4
Read group (RG:Z:) position in tags seems to matter and will not run without it being at the end
#102
JustinChu
closed
1 year ago
3
Symlink as bam/cram input for extraction function
#101
JiaweiShen1116
closed
2 years ago
1
Matching Called VCF and Uncalled CRAMs
#100
marcustutert
opened
2 years ago
6
Filtering on nsites
#99
marcustutert
opened
2 years ago
5
Error extracting from a VCF
#98
marcustutert
opened
2 years ago
1
merging somalier files for different chromosomes
#97
burakalver
closed
2 years ago
4
Error with find-sites
#96
ashotmarg
opened
2 years ago
15
Increasing Number of SNPs improving inference?
#95
marcustutert
opened
2 years ago
2
No output - docker
#94
krukanna
closed
2 years ago
4
somalier ancestry and relate freeze on writing output on BeeGFS filesystem
#93
edg1983
opened
2 years ago
5
Bioconda recipe for somalier
#92
tamuanand
closed
1 year ago
3
known mouse sites
#91
igordot
opened
2 years ago
5
Sample id duplicates
#90
andrewpatto
closed
2 years ago
6
Runtime with large datasets
#89
marcustutert
opened
2 years ago
39
Found Zero Sites
#88
marcustutert
opened
2 years ago
9
Licensing
#87
bballew
closed
2 years ago
2
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