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brentp
/
somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
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n in relatedness result
#86
wac
closed
2 years ago
1
Update README.md to include cmd descriptions
#85
zztin
closed
2 years ago
2
Update relate.nim for better formatting
#84
zztin
closed
2 years ago
1
HTML report
#83
Danisov
closed
2 years ago
5
Issue extracting variants with VCF
#82
holtjma
closed
2 years ago
5
somalier ancestry : Argument list too long
#81
nrosewick
closed
2 years ago
3
Comparing Results with Multiple Samples with Same Name
#80
brcopeland
closed
2 years ago
1
Checking concordance between RNA and DNA samples
#79
boyangzhao
closed
2 years ago
4
relatedness results question
#78
JonEilers
closed
3 years ago
4
SIGSEGV error for somalier ancestry
#77
nswh
closed
3 years ago
5
missing pairs - somalier relate v. >= 0.2.7
#76
LolloPero
closed
2 years ago
5
minimum number of sites
#75
igordot
opened
3 years ago
5
Definition of relatedness as implemented in somalier
#74
asp8200
opened
3 years ago
1
Sex QC
#73
jrejente
closed
2 years ago
9
Running somalier on bam files in s3?
#72
nspies-celsiustx
opened
3 years ago
3
Issue with reading mutect2 output on somalier (fileformat=VCFv4.2)
#71
brain-discourse
closed
3 years ago
5
Feature request: install somalier from anaconda
#70
kate-simonova
closed
3 years ago
3
How to specify tumor/normal pairs
#69
V-Catherine
closed
3 years ago
9
Static OSX binary?
#68
ssadedin
opened
3 years ago
6
Ancestry estimate using gnomad v3 data?
#67
theodorc
opened
3 years ago
2
ancestry output error
#66
olenamarchenko1234
closed
3 years ago
6
ENH: add read_haps algorithm to estimate contamination
#65
brentp
opened
3 years ago
5
any plans to bring back the option to use multiple threads?
#64
svural
opened
3 years ago
1
Comparison 1 to n samples
#63
svural
opened
3 years ago
0
full results from relate output
#62
rdmorin
opened
3 years ago
4
Runtime for ancestry estimate?
#61
bhanratt
opened
3 years ago
6
Generated html file empty
#60
dBenedek
opened
3 years ago
9
Ancestry Error: unhandled exception: couldn't open sketch file
#59
bopohdr
closed
3 years ago
7
High relatedness for many unrelated individuals
#58
lindenb
closed
3 years ago
5
headers for unprefixed genome builds have chr prefix
#57
rdmorin
opened
4 years ago
0
Allow to specify homozygote call threashold
#56
fgvieira
closed
4 years ago
0
Somalier underestimates relatedness if low sites overlap
#55
fgvieira
closed
4 years ago
3
Missing relatedness pair
#54
eyu8
closed
4 years ago
2
Illegals storage access. (Attempt to read from nil)
#53
vdejager
closed
4 years ago
6
Docker v0.2.10 missing
#52
Briteguy
closed
4 years ago
3
Basic IBSX question
#51
holtjma
closed
4 years ago
5
Error: unhandled exception: Illegal parameter in singular value decomposition gesdd
#50
ekarlins
opened
4 years ago
9
add option to scale ibs0 and ibs2 by n
#49
brentp
closed
3 years ago
0
meaning of warning:cant use more than 65535 sites
#48
danrlu
opened
4 years ago
4
wrong header on relate pairs output
#47
fgvieira
closed
4 years ago
1
Crash with 0.2.9
#46
holtjma
closed
4 years ago
8
Limit number of threads used
#45
fgvieira
closed
4 years ago
5
Allows for mix of AD and MIN_DP in combined GVCF files, prioritizes exact matches of alleles when selecting sites
#44
ameynert
closed
4 years ago
3
Distinguish between bam files having the same bam sample ID
#43
chenwenan
closed
4 years ago
3
show warning when .somalier files have no sites with depth > 0
#42
taytayp
opened
4 years ago
4
Added option to prefix sample names in the digests
#41
kpalin
closed
4 years ago
4
unspecified parent
#40
brentp
opened
4 years ago
0
gVCF v. VCF outputs
#39
holtjma
closed
2 years ago
5
html: hover in select-box should show short description
#38
brentp
closed
4 years ago
1
`Argument list too long' on 30k samples
#37
asazonov
closed
4 years ago
2
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