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brentp
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somalier
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
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Feature request: output per site info (e.g. genotype, depth)
#36
fgvieira
opened
4 years ago
4
ancestry
#35
brentp
opened
4 years ago
0
Deep
#34
brentp
closed
4 years ago
0
Feature request: option to ignore filters
#33
holtjma
closed
4 years ago
5
subset unrelated samples for large cohorts
#32
brentp
closed
4 years ago
1
`[somalier] found 0 sites' error when extracting from array .vcf.gz
#31
asazonov
closed
4 years ago
31
IBD
#30
brentp
opened
4 years ago
0
Add groups
#29
brentp
closed
4 years ago
0
Add principal component export for bg and sample in ancestry-predict.py
#28
tstannius
closed
4 years ago
4
Feature Request: Support gVCF
#27
holtjma
closed
4 years ago
13
Suggestion: use groups info (same individual) to infer expected relatedness
#26
fgvieira
closed
4 years ago
5
Add plot option to ancestry-predict.py
#25
fgvieira
closed
4 years ago
0
`ancestry-predict.py` error
#24
fgvieira
closed
4 years ago
2
correct for population structure in relatedness
#23
brentp
opened
4 years ago
0
release 0.2.1?
#22
brwnj
closed
4 years ago
1
Updates results.html
#21
brwnj
closed
5 years ago
0
Updates HTML
#20
brwnj
closed
5 years ago
1
new tool fam-finder
#19
brentp
closed
5 years ago
0
unify markers for GRCh37, hg38
#18
brentp
closed
5 years ago
1
add genomic depth view
#17
brentp
closed
5 years ago
1
Sub commands
#16
brentp
closed
5 years ago
0
.html - toggling 'unrelated' data on/off makes portion of 'related' data invisible
#15
JosephMcCarter
closed
5 years ago
3
Some grouped pairs in groups.csv shown as 'unrelated' in .html
#14
JosephMcCarter
closed
5 years ago
7
nan values break output .html
#13
JosephMcCarter
closed
5 years ago
3
ENH: diagnostic output of proportion of sites with AB not in [0.2, 0.8]
#12
brentp
closed
5 years ago
1
relatedness calculation
#11
danielecook
closed
5 years ago
2
html: add box to enter sample name for highlighting.
#10
brentp
closed
5 years ago
0
Occasional access errors with http file pointers: Read block operation failed with error 2 after 0 of 4 bytes
#9
avilella
opened
5 years ago
4
cross individual contamination estimation
#8
mflevine
opened
5 years ago
36
Large number of n_unknown
#7
mflevine
closed
5 years ago
7
output % of split reads
#6
brentp
opened
5 years ago
0
relatedness = -nan and no HETs found
#5
lconde-ucl
closed
5 years ago
14
Erroneous "index not found" errors
#4
jblachly
closed
5 years ago
12
cancer ChIPseq data and whole exome data
#3
crazyhottommy
closed
5 years ago
2
site-selection with BS-Seq in mind
#2
brentp
closed
5 years ago
1
images
#1
brentp
closed
5 years ago
0
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