-
Dear Vadim
In the diann results, most of the Protein.ids are uniprot accession ids (from the fasta file I used), but some are accession ids combined by ";" . Some are combined with cRAP-***, I thin…
-
1. Remove Redundant catalog_id from store Table
The store table includes a catalog_id column, but catalogs are already linked to stores via the catalog table. Remove catalog_id from the store table t…
-
I have been trying to run command line but :
asap-prep --target ZIKV-NS2B-NS3pro --pdb-file zikv_ns2b3.pdb --output-dir orig_prepped --align zikv_ns2b3.pdb --oe-active-site-residue TYR:161::B --ref-…
-
Hi everyone,
In this project, we have a bunch of experimental data on the binding of small molecules to WDR91. Many of the molecules are in nice matched pairs, in which the molecules differ by a si…
-
DeepPeptide predicts cleavage peptides from amino acid sequences. It reports both peptides and propeptides. For propeptides, it uses the [uniprot definition](https://www.uniprot.org/help/propep): "a p…
-
Hello,
I'm an undergraduate biotechnology student, currently in a project involving vaccine design. I was having some issues trying to understand how to use the code. I tried to implement it by cr…
-
Hello,
Thanks so much for making this work available on Github!
I am trying to design a binder by using RF diffusion to generate the CDR regions of a pre-exisiting nanobody.
When using motif…
-
Create module that describes the purification of proteins from expression cultures.
Based on the protocol from https://raw.githubusercontent.com/dacarlin/bagel-protocol/master/production:
## Day 4: P…
-
On 2024-06-12 8:19 pm, Romeo Stevens wrote:
> Thanks for giving us a try. The original recipe will be posted to the mealsquares website.
-
What is the limit to number of repeating chains I can design in a homooligomer with PMPNN? I get this error when I tried 9 chains:
```
File "/nemo/lab/debenedictise/home/users/acarb/ProteinMPNN…