RosettaCommons RFdiffusion issues

RosettaCommons / RFdiffusion

Code for running RFdiffusion

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issues

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bug

#281 Ryosuke-254 opened 5 days ago
1
Fine-tuned model

#279 steven0seagal opened 2 weeks ago
0
Enable running with T < 15

#278 prihoda opened 3 weeks ago
0
Fix Torch CPU support in SE3Transformer

#277 prihoda opened 3 weeks ago
0
How to generate compact binders?

#276 bzhousd opened 3 weeks ago
0
Partial diffusion with sequences does not work

#275 gezmi opened 3 weeks ago
1
Add Container definition - created by mistake

#274 jIskCoder closed 1 month ago
0
Error in latest commit

#273 zhang-bo-lilly opened 1 month ago
0
Problem about design_ppi_scaffolded.sh in the example

#272 kn301BE opened 1 month ago
5
Discrepancies in Absolute Coordinates & Missing Side Chains in Output

#271 patricia-rocha opened 1 month ago
1
Merge in code for Caixuan's paper

#269 joewatchwell closed 1 month ago
0
RF to refine PDB

#267 ZhuLvs opened 1 month ago
1
RFDiffusion Partial Diffusion Error: Mismatched Contig Length

#266 mavericb closed 1 month ago
4
Fixed Segments in Generated PDB Files Don't Match Reference PDB File

#265 patricia-rocha opened 1 month ago
2
Crashing when trying to run "design_motifscaffolding.sh"

#264 sahamitul opened 1 month ago
1
diffuser.T is being ignored

#263 markf94 opened 1 month ago
1
Binder design - clarification on number of binders per target

#262 patricia-rocha opened 2 months ago
0
pixi dependencies information for newbie.

#261 partrita closed 1 week ago
0
ImportError: cannot import name 'SE3Transformer'

#260 partrita closed 2 months ago
2
Using sequence in potentials

#259 geraseva opened 2 months ago
0
Fine tuning by using my own dataset

#258 Aminoacid1226 opened 2 months ago
0
FileNotFoundError:

#257 Ryosuke-254 opened 2 months ago
2
Installation doesn't recognize CUDA (due to numpy upgrade to v2.0.0)

#256 harshagrawal13 opened 3 months ago
0
Multiple active site scaffolding is possible?

#255 sj584 opened 3 months ago
0
Numpy 2.0

#254 ajfriedman18 opened 3 months ago
0
use user HOME dir for cache, config, models

#253 EricDeveaud opened 3 months ago
0
installation on read only directory :: problems

#252 EricDeveaud opened 3 months ago
0
why default pdb db is set to examples/input_pdbs/1qys.pdb

#251 EricDeveaud opened 3 months ago
0
Bug fix: centroid_m2

#250 awlange opened 3 months ago
0
Fixed Dockerfile numpy version bug

#249 AlexTaguchi opened 3 months ago
1
Question in lab experiment

#248 ChengkuiZhao opened 4 months ago
0
RFdiffusion on TPUs?

#247 aminsagar opened 4 months ago
0
Downgrade torch 2.1.2

#246 hmc-cs-bbaker closed 4 months ago
0
pin PyTorch to avoid bug

#245 hmc-cs-bbaker closed 4 months ago
0
Inquiry on Customizing Binder Design with Fixed Parts in RFdiffusion

#244 Thanasis-P opened 4 months ago
4
Design small molecule binding proteins [potentials.guiding_potentials]

#242 Lyueyang2020 opened 4 months ago
2
pyRosetta not found for Fold conditioning design

#241 363892878a opened 4 months ago
1
Symmetry option model_only_neighbors functional?

#240 JA-Hull opened 4 months ago
0
Traceback (most recent call last)

#238 AIM132 opened 4 months ago
2
docs: about a python command pitfall

#237 linonetwo opened 4 months ago
0
fix: Add `.long()` to seq_orig

#236 linonetwo opened 4 months ago
0
curious to know whether only 3-helix binder protein could be design if using scaffold-based binder design.

#235 Huilin-Li opened 4 months ago
0
problems installing from env/SE3nv.yml

#234 cbaakman opened 5 months ago
2
Add information about sampled contig

#233 roccomoretti opened 5 months ago
0
In lab experiment, binding affinity is pretty strong, but pae_interaction is only around 28

#232 Huilin-Li opened 5 months ago
13
RuntimeError: PytorchStreamReader failed reading zip archive: failed finding central directory

#231 walee-1 opened 5 months ago
0
Allow manually setting device name (CUDA/CPU)

#229 jrom99 closed 2 months ago
0
can't access http://files.ipd.uw.edu/pub/RFdiffusion/... to download weights

#227 Huilin-Li opened 5 months ago
2
is there a way to design multiple chain's 1 binder in same time?

#225 frankstanmonster opened 5 months ago
2
Is there a way to increase the weight of hotspots?

#224 Huilin-Li opened 5 months ago
0