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Currently we don't differentiate between genes and proteins, we just lump them all under gene. However, most go annotation is at the protein level. When we have a go annotation, and we ask quickgo …
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The following relations do not have textual definitions. Some seem obvious by their labels, but I never trust that. I'll be trying to define these based on the paper and citation tracking, but contrib…
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Kristian just explained what's going on in [this](http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004870) paper, and it turns out to be precisely what we need to do with unseede…
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Wrt cleaning up protein complex terms that may be too species-specific
(hint: if they have only one annotation...)
make sure that when a strategy is set in place, this is very clearly communicated to …
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The pre-period definitions for
DNA-directed 5'-3' RNA polymerase activity (GO:0003899)
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).
and
RNA polymerase I…
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Hi,
I am trying to use RepeatModeler-2.0.1, installed with dependencies:
```
RepeatModeler Version 2.0.1
===========================
Search Engine = rmblast 2.10.0+
Dependencies: TRF 4.10, REC…
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Hello,
I am working with long non-coding rnas of 9 different species and would like to determine how conserved they are. To do this, I did a reciprocal blastn of all possible species combinations …
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Hi Vizueta,
I have the following questions after reading your articles(#Comparative Genomics Reveals Thousands of Novel Chemosensory Genes and Massive Changes in Chemoreceptor Repertories across Ch…
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Protein profile assumes a single protein for a single species. Sites such as Guide to Pharmacology focus more on the interaction rather than the protein. Thus their page on [A1 Receptor](https://www.…
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Hi, thanks for the great repo. I'm interested in generating sequences with bmDCA for protein families that have around ~20k samples with ~400-600 total aligned positions (and no position with more tha…