Dfam-consortium RepeatModeler issues

Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool

Other

182 stars 23 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Cant run rmblastn

#246 ali21049 opened 2 weeks ago
1
The problem of LTRpipline

#245 duan12345678 opened 1 month ago
1
Problem with RepeatMasker after successful RepeatModeler run

#244 pedres opened 1 month ago
4
Long Comparison Time

#243 wwyyxx517 opened 1 month ago
1
ROUND5 ERROR from search engine (0)

#242 pure6688 opened 2 months ago
1
Error in Clustering Step of LTR Pipeline

#241 simone-says opened 3 months ago
1
Broken symbolic link on error in LTR_Retriever

#240 benfulton closed 1 week ago
1
ERROR from search engine (0)

#239 pure6688 opened 3 months ago
5
error in builddatabase

#238 weirdo-onlooker opened 3 months ago
1
0 clean candidates remained after cleaning up candidates with LTR_retriever

#237 Zoe133 closed 3 months ago
10
Error: xxx/tmpSample.fa not found

#236 ekaralashvili opened 3 months ago
1
consensi.fa is empty

#235 44314474 opened 4 months ago
2
RepeatClassifier error "No database indicated or it is an empty file."

#234 kdarragh1994 closed 5 months ago
4
how to finish an interrupted RepeatModeler run after manually finishing LTR_retriever

#233 fanhuan closed 4 months ago
1
Can't locate File/Which.pm in @INC

#232 luciaximena opened 5 months ago
13
Wrong help message for the numAdditionalRounds option

#231 tomasbruna opened 6 months ago
0
LTR_retriever failed to generate a file

#230 cyycyj opened 6 months ago
4
How long does it take RepeatModeler to complete the analysis?

#229 SowmyaPulapet opened 7 months ago
1
sort failed for images/spread1

#228 tanpham15 opened 7 months ago
2
Thread option is not passed to RepeatClassifier

#227 Alteroldis opened 7 months ago
0
No space left on device Error

#226 Ruiqi-CUB opened 7 months ago
0
Improving recovery mode

#225 Alteroldis opened 7 months ago
1
What is the default search engine used by BuildDatabase?

#224 Ruiqi-CUB opened 7 months ago
0
recoveryDir issue

#223 rhysf opened 7 months ago
0
Segmentation fault and no recovery possible

#222 RNieuwenhuis opened 7 months ago
0
issue with alignAndCallConsensus.pl script

#221 s-travers opened 8 months ago
0
Can't locate 'setThreadByQuery' via package "NCBIBlastSearchEngine" at RepeatModeler/Refiner

#220 tania-k opened 8 months ago
1
build_lmer_table failed. Exit code 65280

#219 chhhhai opened 8 months ago
2
Development

#218 rmhubley closed 9 months ago
0
Local RepeatModeler and RepeatMasker installation slower than conda install

#217 drs closed 8 months ago
9
FastaDB::compact - Error could not locate file /home/xly/work8/403/repeat/RM_3970586.SunAug270923512023/round-4/sampleDB-4.fa!

#216 YDD99 opened 10 months ago
2
Repeatmodeler will not install in Mac OS monterey

#215 emmannaemeka closed 9 months ago
3
RepeatModeler ended with: famdef failed. Exit code 768

#214 kdarragh1994 closed 9 months ago
2
Unexpected filename for NINJA

#213 liamfriar closed 10 months ago
4
RepeatModeler 2.0.4 results no longer includes "Type=LTR"

#212 piosierra opened 1 year ago
2
How to make one non-redundant TE library for multiple genomes?

#211 GRGong closed 10 months ago
1
Replacing '/usr/bin/perl' and similar with '/usr/bin/env perl'

#210 snehring opened 1 year ago
0
NINJA segmentation fault

#209 rmhubley closed 1 year ago
0
RepeatScout did not return any models & ERROR from search engine

#208 ywddwed closed 11 months ago
1
LTRHarvest - Ninja parameter

#207 Yiguan closed 1 year ago
1
LTR Harvest - core dumped

#206 pedro-mmartins closed 11 months ago
1
the lastest version of repeatmodeler was error when running it, reveals "ERROR from search engine (3) "

#205 Jiangjiangzhang6 closed 1 year ago
4
Job directory RM_.* cannot be automatically deleted after the run ends

#204 bitahu closed 11 months ago
1
Does -srand <number> option cause RepeatModeler to be deterministic?

#203 alankuo1 opened 1 year ago
6
LtrPipeline: GenomeTools failed to run ltrharvest

#202 panpandzf opened 1 year ago
5
Running Ltr_retriever...Died at /software/RepeatModeler-2.0.4/LTRPipeline line 693.

#201 ShirelyI opened 1 year ago
11
How to get the loci of the de novo transposable elements from long-read RNA-seq data?

#200 Dongxu-Zheng opened 1 year ago
0
Fail to run Ltrharvest

#199 mscbig opened 1 year ago
3
Development

#198 rmhubley closed 1 year ago
0
0 families discovered

#197 NicMAlexandre closed 10 months ago
1