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Dfam-consortium
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RepeatModeler
De-Novo Repeat Discovery Tool
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0 families discovered
#197
NicMAlexandre
closed
10 months ago
1
How do I get genome.fa.pass.list(LTR_retriever output file) ?
#196
th2ch-g
closed
11 months ago
1
Could not open refined model
#195
NicMAlexandre
closed
1 year ago
1
RepeatModeler2 LtrPipeline not return any results
#194
mkbcit
closed
1 year ago
1
Linup error: "I don't know how to parse this id"
#193
francicco
closed
11 months ago
1
$genomeDB-families.fa missing
#192
francicco
opened
1 year ago
0
Dependecy for davidExtendConsRAM.pl
#191
francicco
closed
11 months ago
0
pull development forward
#190
rmhubley
closed
1 year ago
0
Development
#189
rmhubley
closed
1 year ago
0
eleredef failed. Exit code 139
#188
MonsterLaplace
opened
1 year ago
0
Resume run with results from a previous version
#187
jeff-godwin
opened
1 year ago
0
Fatotwobit
#186
piroyon
closed
11 months ago
1
Refiner: what is allowed in FASTA header lines?
#185
mcfrith
opened
1 year ago
1
A way to speed up Repeatmodeler
#184
yangfangyuan0102
closed
1 year ago
1
RepeatClassifier: ERROR from search engine (2)
#183
wjq1981
opened
1 year ago
4
Substitution matrix
#182
mylena-s
closed
1 year ago
1
Allow lowercase bases in Refiner?
#181
mcfrith
opened
1 year ago
1
The log file shows that there are results file output, but I can't find it in the directory
#180
biology-han
opened
1 year ago
1
Can't call method "setLeftLinkedHit"
#179
Ghanizadeh1980
closed
1 year ago
1
Some question about running parameter "-LTRStruct"
#178
1835033964
opened
1 year ago
1
RepModelConfig.pm need to account for more binaries
#177
EricDeveaud
closed
11 months ago
1
RepeatScout did not return any models.
#176
IanDMedeiros
closed
1 year ago
0
Is ARM64 a supported platform ?
#175
gancho-ivanov
closed
11 months ago
4
LTR Structural Analysis ======================= Running LtrHarvest... : 06:52:54 (hh:mm:ss) Elapsed Time Running Ltr_retriever... : 07:21:12 (hh:mm:ss) Elapsed Time Aligning instances... : 04:30:13 (hh:mm:ss) Elapsed Time Clustering...LTRPipeline: Error - could not cluster MAFFT results. : 00:00:00 (hh:mm:ss) Elapsed Time LTRPipeline : Error - could not open /nfs_fs/nfs4/sunyb/zuobin/frog-genome/TE/RM_224838.SatJun252131402022/LTR_248434.FriJul10231282022/clusters.dat! at /nfs_fs/nfs4/sunyb/miniconda3/envs/repeatmodeler2/share/RepeatModeler/LTRPipeline line 325. LTRPipeline Time: 18:45:12 (hh:mm:ss) Elapsed Time
#174
zuodabin
closed
9 months ago
6
RepeatModeler parallelization not working?
#173
TaehyungKwon
closed
11 months ago
6
sumarry result tabel
#172
ABDULLAHGUJJAR
closed
11 months ago
1
can't find species-families.fa file
#171
ABDULLAHGUJJAR
closed
2 years ago
0
Restarting LTRHarvest
#170
CIWa
opened
2 years ago
1
FastaDB::compact - Error could not locate file /group/pasture/Saila/scanPAV/Kyuss_Imp04_40kb/RepeatMasker_imp04vsKyuss/RM_122929.FriMay61008492022/round-1/sampleDB-1.fa!
#169
biowackysci
closed
11 months ago
1
LTRHarvest Segmentation Fault
#168
NicMAlexandre
opened
2 years ago
2
RepeatClassifier: does not work correctly if run several genomes at the same time
#167
HeloiseMuller
opened
2 years ago
0
Died at LTRPipeline line 693.
#166
minglibio
opened
2 years ago
5
Align and Call Consensus for Curation
#165
morganm804
opened
2 years ago
1
LtrDetector seems to give me more, faster and better results when compared to LTR_harvest
#164
grpiccoli
opened
2 years ago
0
Running repeat modeler for 7+ days on Cluster
#163
RajvParvathaneni
opened
2 years ago
3
How to install NINJA and ABBLAST?
#162
Shokusei
opened
2 years ago
1
Development
#161
rmhubley
closed
2 years ago
0
eleredef failed. Exit code 768 with Singularity
#160
Hai1983
opened
2 years ago
14
Does RepeatModeler require a NTFS disk ?
#159
giacuong171
opened
2 years ago
1
Running round-5 for two weeks
#158
carolhsb
opened
2 years ago
11
Configuring
#157
SheepwormJM
closed
2 years ago
2
BLAST Database error
#156
BRNiu
opened
2 years ago
0
Segmentation fault running ltrharvest
#155
Aphrix
opened
2 years ago
0
Can't locate Devel/Size.pm
#154
BRNiu
opened
2 years ago
2
eleredef failed. Exit code 512
#153
Niohuruzh
closed
2 years ago
2
Huge cd-hit-stdout with basically no content - should I kill these jobs?
#152
KatharinaHoff
opened
2 years ago
0
GPU support for RMBlast in order to speed-up RepeatModeler
#151
fgajardoe
opened
2 years ago
1
BLAST Database error
#150
wjq1981
closed
2 years ago
2
-recoverDir option not working
#149
caonetto
opened
2 years ago
1
Perl Version of Linux System?
#148
kuangtianhui
opened
2 years ago
3
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