issues
search
Dfam-consortium
/
RepeatModeler
De-Novo Repeat Discovery Tool
Other
182
stars
23
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Perl Version of Linux System?
#148
kuangtianhui
opened
2 years ago
3
Adding paths to dependency directories during set up
#147
jaredbernard
closed
2 years ago
4
high proportion Unclassified
#146
conniecl
opened
2 years ago
3
Round 1 parallelisation
#145
BioFalcon
opened
2 years ago
0
RepeatModeler Out of Memory error - RMblast
#144
goodgodric28
closed
2 years ago
1
RepeatModeler runs for a long time
#143
munegowda
opened
2 years ago
3
Unknown option: ltrstruct
#142
ld9866
closed
3 years ago
7
LTRHarvest fails to run
#141
harish0201
opened
3 years ago
1
FastaDB::_getFastaRecords: Could not locate lastSeqID=gi|5Query_574! at /my_path/RepeatModeler-2.0.2a/RepeatUtil.pm line 309
#140
Lin-Yuying
opened
3 years ago
3
last minute path fixes
#139
rmhubley
closed
3 years ago
0
2.0.2 Release
#138
rmhubley
closed
3 years ago
0
RepeatClassifier stops with error missing RepeatMasker.lin.nsq
#137
Shrihariprasad
closed
3 years ago
3
build_lmer_table failed. Exit code 35072
#136
mdebiasse
opened
3 years ago
2
Recon Family Size and Final Multiple Aligment Size
#135
luizagomesdeoliveira
closed
3 years ago
0
LTR clustering step stops
#134
rdacemel
opened
3 years ago
11
There was .nhr .nin .nnd .nni .nog .nsq .translation in my RepeatModeler outputs, but had no consensi.fa.classified, how to make it?
#133
gzhgzh
opened
3 years ago
1
It may maybe a bug with -recoverDir
#132
kuangtianhui
opened
3 years ago
1
Add issue templates
#131
jebrosen
closed
3 years ago
0
How to stop RepeatModeler saving to $HOME
#130
Rob-murphys
opened
3 years ago
4
LTR Structural problem
#129
Koruomi
closed
11 months ago
6
Unusually high number of "unknown" elements from `RepeatClassifier` when using RepeatMasker 4.1.1
#128
jebrosen
closed
11 months ago
0
can't find species-families.fa file
#127
jebrosen
opened
3 years ago
4
Speed up Refinder in round-1
#126
xiaoyezao
opened
3 years ago
1
"RepeatScout did not return any models" because nseg is missing in RepModelConfig.pm
#125
xiaoyezao
closed
3 years ago
4
About parameter "-LTRStruct"
#124
kuangtianhui
opened
3 years ago
2
LTRPipeline: Error - could not produce a multiple alignment from the denovo LTR results (mafft error)
#123
ksielemann
closed
3 years ago
2
How to use RepeatClassifier to classify large repeat sequences?
#122
BoredMa
opened
3 years ago
10
Difference about N50 between RepeatMedler and Quast
#121
kuangtianhui
closed
3 years ago
5
Confusion of Results of BuildDatabase
#120
kuangtianhui
closed
3 years ago
2
Unknown families contain functional domains?
#119
lijingbu
opened
3 years ago
0
Round-5 issue in small genome
#118
AlexdeMendoza
opened
3 years ago
6
My <dataset.fa.out> is mostly simple repeats and low complexity rather than TE families, is that normal?
#117
xyz0o
closed
3 years ago
7
how to combine denovo and RepBase Libraries in RepeatMasker?
#116
xyz0o
opened
3 years ago
0
Issue with the all-by-other comparisons in RepeatModeler Round 2
#115
goodgodric28
closed
3 years ago
2
RepeatModeler ended with error
#114
yuanyuan12543
opened
3 years ago
3
LTRStruct bug
#113
cell-c
closed
3 years ago
5
RepeatClassifier custom -num_threads
#112
cascoamarillo
closed
3 years ago
2
FastaDB::compact - Error could not locate file tmpConsensi.fa.masked!
#111
sihellem
opened
3 years ago
4
build_lmer_table failed. Exit code 256
#110
BenjaminGuinet
opened
3 years ago
3
LTR Pipeline hangs
#109
hung-th
opened
3 years ago
3
RepeatModeler2.0 bug fix question
#108
johnssproul
closed
3 years ago
2
RepeatModeler - Everything works except LTR Harvest
#107
NicMAlexandre
opened
3 years ago
2
Can't locate WUBlastSearchEngine.pm
#106
ohan-Bioinfo
closed
3 years ago
8
LTR structure interpretation
#105
MFSeidl
opened
3 years ago
0
。out
#104
sqqsjc
closed
3 years ago
0
Consensi.fa.classified
#103
niWdooG
closed
1 year ago
4
Length of identified repeats
#102
FabianDK
opened
3 years ago
1
BuildDatabase error on big genome
#101
AlenaKizenko
opened
3 years ago
4
Round2 batch fasta does not exist
#100
niccw
opened
3 years ago
17
Repeat identification difference due to the version change?
#99
yifeng-evo
opened
3 years ago
1
Previous
Next