Dfam-consortium RepeatModeler issues

Dfam-consortium / RepeatModeler

De-Novo Repeat Discovery Tool

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issues

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RepeatModeler2.0 bug fix question

#108 johnssproul closed 3 years ago
2
RepeatModeler - Everything works except LTR Harvest

#107 NicMAlexandre opened 3 years ago
2
Can't locate WUBlastSearchEngine.pm

#106 ohan-Bioinfo closed 3 years ago
8
LTR structure interpretation

#105 MFSeidl opened 3 years ago
0
。out

#104 sqqsjc closed 4 years ago
0
Consensi.fa.classified

#103 niWdooG closed 1 year ago
4
Length of identified repeats

#102 FabianDK opened 4 years ago
1
BuildDatabase error on big genome

#101 AlenaKizenko opened 4 years ago
4
Round2 batch fasta does not exist

#100 niccw opened 4 years ago
17
Repeat identification difference due to the version change?

#99 yifeng-evo opened 4 years ago
1
RepeatModeler2 failing on round2 all-by-other

#98 jamesdgalbraith closed 3 years ago
2
empty tmpConsensi.fa

#97 MikiSchikora opened 4 years ago
3
large genome in scanning TEs with the parameter `-LTRStruct`

#96 zoukai3412085 closed 4 years ago
2
large genome annotation

#95 liufuyan2016 opened 4 years ago
1
Question

#94 ohan-Bioinfo opened 4 years ago
2
RepeatModeler2 duplicate sequences within the same alignment

#93 Isaac1293 opened 4 years ago
6
Unable to find final files

#92 acontrerasg closed 4 years ago
5
ltrharvest issue

#91 DNAcastigator opened 4 years ago
3
TRF

#90 mylena-s closed 4 years ago
2
problem installing RMBlast

#89 DNAcastigator opened 4 years ago
15
error in multi threads when I use " -LTRStruct "

#88 longzhangnation closed 4 years ago
2
Docker and RepBase use

#87 pedrobdfp opened 4 years ago
5
Question: cd-hit clustering

#86 DrHogart opened 4 years ago
3
A lot of unknown repeats

#85 gmoneyomics opened 4 years ago
1
Error running repeatModeler

#84 ohan-Bioinfo closed 4 years ago
3
Missing RepeatMasker.lib.nsq and Dfam use

#83 pedrobdfp closed 4 years ago
17
NCBIBlastSearchEngine::search: Error...query RM_39391.MonMay181604012020/round-2/batch-35.fa) does not exist!

#82 U201412486 closed 4 years ago
5
RepeatModeler v 2.0.1 doesn't produce "consensi.fa.classified"

#81 lucolotto closed 4 years ago
11
Resume on LTRStruct or only run LTRStruct

#80 JudithR closed 4 years ago
2
trf path not tested, everything lost if it fails (and of course, it failed...)

#79 BiodivGenomic opened 4 years ago
12
The difference between the number of unclassified and unknown sequences in the output

#78 xvtyzn closed 4 years ago
2
round-1 error could not open translation file

#77 dmacguigan opened 4 years ago
11
Error running BuildDatabase

#76 avdanurag opened 4 years ago
1
There in no SINEs in the result

#75 WU-WEIHONG closed 3 years ago
6
Errors with the -LTRStruc parameter

#74 oushujun opened 4 years ago
16
Configuring AB-BLAST not working.

#73 sjfleck opened 4 years ago
3
eleredef - long runtime

#72 TomHarrop opened 4 years ago
9
Specific RMBlast version needed?

#71 oushujun closed 4 years ago
3
Repeatmodeler kept dying

#70 emmannaemeka opened 4 years ago
12
Exceeding cluster time limit & understanding # of rounds

#69 sjfleck opened 4 years ago
8
Segmentation Fault and Splitting

#68 BioFalcon opened 4 years ago
4
Changing check for larger genomes

#67 BioFalcon closed 4 years ago
5
the output of building the Library using RepeatModeler

#66 xiongqian123456789 opened 4 years ago
2
recoverDir can not recover from a failed run of the LTRPipeline

#65 jebrosen opened 4 years ago
14
RepeatModeler resuming of run not working

#64 anapopov opened 4 years ago
1
stop at round-6 without error message

#63 njaupan closed 4 years ago
2
RepeatModeler 2.0.1 in conda now

#62 Juke34 opened 4 years ago
9
RepeatModeler is showing no progress

#61 devenderarora closed 3 years ago
17
LTR Structural Analysis issue

#60 Tdanis opened 4 years ago
1
Can not locate file

#59 Tdanis closed 4 years ago
2

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