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Now that there is a critical mass of minor improvements to be made, I am creating a master issue to organize all of the changes which will go into a new minor release. I am describing this as a minor …
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Is there a way to use this with custom genomes that are acquired de novo?
Also, would it be possible to support [sylph](https://github.com/bluenote-1577/sylph) or [skani](https://github.com/blueno…
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there always was a problem relative to what the configuration is - I wonder if recent changes removed the config_dirname and tests didn't flag the problem.
```
configuration = Configuration('test.…
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We have sequenced **nasopharyngeal (NP) specimens** from infants which are in general **low biomass specimens**. We included non-template controls in each run.
Overall, 128 NTCs and 708 biological sa…
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In the properties table for each element it says how many stable / unstable isotopes there are. It will be really useful to have instead the masses of the most important ones and their relative abunda…
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Case1 data (OG Tripoli functionality) detects isotope ratio data. For isotope ratio time series, Tripoli should take the logarithm of the ratios, evaluate statistics, then exponentiate. This is the …
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With the chosen genomes, generate the abundance profiles.
Smartest seems to create a bash script that generates it for us.
Here is info from my comment on [#13]
**HOW I UNDERSTAND THE ABUNDANCE C…
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there always was a problem relative to what the configuration is - I wonder if recent changes removed the `config_dirname` and tests didn't flag the problem.
```python
configuration = Configuration(…
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So - I was trying to futz with this package to understand how it works, and find that D_Q returns about the same number regardless of the trait values. Below is a reprex:
```
library(hillR)
libra…
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Hello,
I am interested in using divnet-rs to calculate beta diversity measures and ideally then using them in the DivNet function testBetaDiversity() to test for significance. I saw the earlier pos…