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ndreey
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ghost-magnet
Molecular Bioinformatics BSc thesis project at University of Skövde
MIT License
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blast-a-bin
#71
ndreey
opened
1 year ago
4
Analysing the data
#70
ndreey
opened
1 year ago
4
Final approach
#69
ndreey
opened
1 year ago
2
Bin removal
#68
ndreey
opened
1 year ago
1
CONCOCT: SAMtools duplicated header
#67
ndreey
closed
1 year ago
2
Evaluation
#66
ndreey
opened
1 year ago
4
Re-run: Benchmark
#65
ndreey
opened
1 year ago
0
CAMISIM: Generated GSA.fasta containing only "N" for host genome.
#64
ndreey
closed
1 year ago
4
Benchmark: AMBER
#63
ndreey
opened
1 year ago
1
Binning: CONCOCT
#62
ndreey
opened
1 year ago
4
Slurm scripts for assembly and evaluation of assembly
#61
ndreey
closed
1 year ago
0
sbatch script
#60
ndreey
closed
1 year ago
0
Benchmark: metaQUAST
#59
ndreey
opened
1 year ago
4
Assembly: megahit
#58
ndreey
opened
1 year ago
4
Quality Control of the 10 samples
#57
ndreey
closed
1 year ago
0
Quality Control: fastp, fastqc and multiqc
#56
ndreey
opened
1 year ago
0
Bunch up
#55
ndreey
closed
1 year ago
0
Abundance v2
#54
ndreey
closed
1 year ago
0
Merge pull request #52 from ndreey/main
#53
ndreey
closed
1 year ago
0
Merge pull request #51 from ndreey/abundance_v2
#52
ndreey
closed
1 year ago
0
Abundance v2
#51
ndreey
closed
1 year ago
0
Merge pull request #49 from ndreey/abundance_v2
#50
ndreey
closed
1 year ago
0
Believe i got the math down
#49
ndreey
closed
1 year ago
0
Abundance calculation FIX
#48
ndreey
closed
1 year ago
2
April clean up
#47
ndreey
closed
1 year ago
0
early april quick clean up, deleting and moving files
#46
ndreey
closed
1 year ago
0
Corrected spelling error
#45
ndreey
closed
1 year ago
0
Update README as it lacked alot of information
#44
ndreey
closed
1 year ago
0
Updated README
#43
ndreey
closed
1 year ago
0
Abundance
#42
ndreey
closed
1 year ago
0
Benchmark: host-contamination analysis
#41
ndreey
opened
1 year ago
2
Abundance
#40
ndreey
closed
1 year ago
0
CAMISIM: Getting it to run locally
#39
ndreey
closed
1 year ago
1
changed something in the documentation
#38
ndreey
closed
1 year ago
0
Merge pull request #36 from ndreey/main
#37
ndreey
closed
1 year ago
0
behind?
#36
ndreey
closed
1 year ago
0
First working version of write_abundance.R which generate the abundan…
#35
ndreey
closed
1 year ago
0
Abundance
#34
ndreey
closed
1 year ago
0
Updated subset_data.R to group better and wrote pseudo code for the f…
#33
ndreey
closed
1 year ago
0
Abundance
#32
ndreey
closed
1 year ago
0
Abundance
#31
ndreey
closed
1 year ago
0
Behind?
#30
ndreey
closed
1 year ago
0
Got the three subsets rdy, need to check so the bacteria subset is 10…
#29
ndreey
closed
1 year ago
0
Updating the get_data.R script to subset the source_genomes
#28
ndreey
closed
1 year ago
0
Abundance
#27
ndreey
closed
1 year ago
0
CAMISIM: Fix Rscript get_data.R
#26
ndreey
closed
1 year ago
7
Abundance
#25
ndreey
closed
1 year ago
0
Abundance
#24
ndreey
closed
1 year ago
0
Abundance
#23
ndreey
closed
1 year ago
0
Abundance
#22
ndreey
closed
1 year ago
0
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