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Would like to write some code for the visualisation of nucleotides in meta-feature plots. This is necessary as we need distinct approaches for codon/codon pair meta-feature plots (CDS co-ordinates) an…
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I am using Ribo-seQC (great package!) on human ribosome sequencing data against Gencode v35 annotations, generated following the instructions. When I run the main RiboseQC_analysis function, the annot…
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It would be great if Wiggle could compute maps with CUDA if cupy is available or without CUDA if not available. Although cryoDRGN users will no doubt have an Nvidia GPU linux system for running cryoD…
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From the discussion in #16628 (preribosome assembly )
I wanted to ask @bmeldal if you consider GO:0030684 preribosome a real complex ? There are 4 EXP.
There are several children with EXP annot…
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Hi,
I am trying to run Pausepred with a ribosome profiling dataset, and I am having a problem of only receiving an output consisting of `chrosome X,Y and MT.`
I am using an Ensembl fasta file ( ge…
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Basic `customNumbering` is being handled in this PR: https://github.com/eternagame/EternaJS/pull/195/commits
However, it would be best to include & display additional information with `customNumber…
rhiju updated
8 months ago
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Today I focused on two different areas; using bacteria and diagnostic tools and different components of genetic circuits. I already knew about the paper based circuit design but figured id include it …
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Please edit [this page](https://github.com/sr320/austral/wiki/Day-01-Notes) to include some key points from Day 1.
sr320 updated
9 years ago
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Reactome
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P62979
http://amigo.geneontology.org/amigo/gene_product/UniProtKB:P62987
About 90 annotations for both spanning many processe…
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Request that add some @amandamok's simulated ribosome profiling data into RiboViz as another vignette. This should provide ideal testing that reads are correctly aligned and of codon-level and gene-le…