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Hello, I am wondering if salmon can be used to quantift ribosome profiling data(Ribo-seq) ? Because I saw that in the index step, the k-mer is 31 by default. However ribo-seq reads is usually less tha…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jianhong/ribosomeProfilingQC
Confirm the followin…
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Hello!
I would like to test your tool, as it seems really fitting to interpret my ribosome profiling data!
I got the earliest issue possible as I get this warning message when I am trying to ins…
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My purpose for using Riboseq is to help define what the CDS, 3' or 5' UTR are for the RNA-Seq and Ribo-Seq data I have. I like the `ribo` data structure developed and the implementation of riboflow, b…
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Write a script to create well-behaved fastq files to test RiboViz performance on UMIs and barcodes, `create_fastq_example.py`.
New-style ribosome profiling libraries have inline UMIs and/or barcode…
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There are a number of data files located in the RiboViz repository e.g. within:
* https://github.com/riboviz/RiboViz/tree/master/scripts
* https://github.com/riboviz/RiboViz/tree/master/vignette/i…
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Name: polysome profiling
Definition: polysome profiling is a biochemical technique that is used to study the associations between multiple ribosome and mRNAs.
Parent Term: Unclear
PMID: 30545912
…
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The term "Ribo-Seq" is currently wrongly classified as "DNA assay" EFO_0001456.
It should be a child of "RNA assay" EFO_0001457 and "assay by sequencer" EFO_0003740.
The latter is needed to correctl…
anjaf updated
5 years ago
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Hello,
I was wondering if you had any suggestion with an error message I get when I try to run the psite function. This is the error I recieved:
processing nuc_genome_102617_RF-15Dark_Rep1_merged.…
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https://www.pombase.org/gene/SPAC110.06
It's odd. I've never noticed a missing image before.