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LabTranslationalArchitectomics
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riboWaltz
optimization of ribosome P-site positioning in ribosome profiling data
MIT License
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Metaprofile plot peak is higher at the stop codon
#83
aswathyseb
closed
3 months ago
2
Question about codon_usage_psite, refseq_sep = " " not fixing
#82
JessieMinyan
closed
6 months ago
4
Short read inputs and questions with bamtolist & codon_usage_psite
#81
chenghongdeng
closed
2 months ago
5
Q: Get the Codon Usage Index Table
#80
chenghongdeng
closed
7 months ago
3
temporary offset (local maximum) mis-identification
#79
iraiosub
opened
7 months ago
3
wired metaplot using meta profile_psite
#78
trista1115
closed
7 months ago
3
riboWaltz run psite() function meet error
#77
Jiahuan90
closed
8 months ago
6
Conda installation fails
#76
matthewfallan
closed
11 months ago
2
Sample names restrictions?
#75
Jelinek-J
closed
11 months ago
2
annotation table format
#74
Mahnaz-Shemirani
closed
11 months ago
10
error occurred in the codon usage part
#73
shaymin84
closed
11 months ago
3
Questions about codon_usage_psite
#72
zzo-joe
closed
1 year ago
6
riboWaltz on galaxy.eu fails to run
#71
scholtzb
opened
1 year ago
13
Error in condon_usage_psite() when measuring a-site
#70
theosusanto
closed
1 year ago
3
Issues on codon_usage_psite: "error in evaluating the argument 'x' in selecting a method for function 'subseq': subscript contains invalid names"
#69
theosusanto
closed
1 year ago
8
Error on codon_coverage
#68
theosusanto
closed
1 year ago
2
some questions about Codon usage
#67
ELMMA-FUNNY
closed
1 year ago
6
psite_info & codon_usage_psite error in evaluating the argument 'x' in selecting a method for function 'subseq'
#66
ChristianRohde
closed
1 year ago
5
Input query
#65
KONeill872
closed
1 year ago
1
Why are some read lengths not in frame?
#64
weishwu
closed
2 years ago
5
region_psite() error
#63
weishwu
closed
2 years ago
2
Would it be possible to find the P-site of novel intergenic genes?
#62
Dongxu-Zheng
closed
2 years ago
8
error with codon_usage_psite()
#61
KONeill872
closed
2 years ago
6
ribowaltz for R version 4.1.2
#60
dksenthil
closed
2 years ago
2
psite error
#59
janhavikolhe
closed
2 years ago
7
Question about rends_heat (Error in `[.data.frame`(annotation, l_utr5 >= utr5l & l_cds > 2 * (cdsl + : object 'transcript' not found)
#58
cornecu
closed
2 years ago
2
how to get the number of read extremities from psite plot
#57
cornecu
closed
2 years ago
2
some quetions about codon_usage_psite( )
#56
ELMMA-FUNNY
closed
2 years ago
6
Inquiry about the article "riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data“
#55
z626093820
closed
2 years ago
4
Error in codon_usage_psite function
#54
agoldkamp
closed
2 years ago
1
Error in h(simpleError(msg, call)) : 在为'subseq'函数选择方法时评估'x'参数出了错: subscript contains invalid names
#53
z626093820
closed
2 years ago
11
the problem of the p site of 30nt reads
#52
z626093820
closed
3 years ago
9
how can i change colour and add the data tags above of the bar
#51
z626093820
closed
3 years ago
1
bamtoist problem
#50
z626093820
closed
3 years ago
1
there is no figure using command "rlength_distr"
#49
z626093820
closed
3 years ago
5
codon_usage_psite problem
#48
z626093820
closed
3 years ago
2
reads_list No results generated，No errors reported
#47
z626093820
closed
3 years ago
2
Plot for "codon_usage_psite" sample comparison
#46
baibing7713661
closed
2 years ago
7
Error using codon_usage_psite()
#45
GKok
closed
3 years ago
12
C stack issue when running region_psite
#44
baibing7713661
closed
3 years ago
17
Error Codon Coverage
#43
FranziMe
closed
3 years ago
8
psite with yeast data
#42
quarkaffi
closed
3 years ago
4
Multiple samples error in rlength_distr
#41
agoldkamp
closed
3 years ago
2
strange bug in region_psite()
#40
yeroslaviz
closed
3 years ago
3
psite_info error
#39
yeroslaviz
closed
3 years ago
7
How riboWaltz decided the CDS start and CDS end position?
#38
Xuan0318
closed
3 years ago
4
Error: $ operator is invalid for atomic vectors during bamtolist
#37
quarkaffi
closed
3 years ago
6
Dealing with multiple input bam files
#36
kdc1127
closed
3 years ago
4
Vectorized input to `element_text()` is not officially supported. Codon_usage
#35
AlexFryd
closed
3 years ago
2
create_annotation could not work on gtf file from ncbi
#34
Xuan0318
closed
3 years ago
13
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