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Hello,
Thank you for developing EpiSCORE. I have been using it to calculate the proportion of cell types making up healthy prostate as well as prostate tumour samples and so have been using mrefPro…
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### Version
1
### DataCap Applicant
Encyclopedia of DNA Elements (ENCODE)
### Project ID
ENCODE01
### Data Owner Name
ENCODE Data Coordinating Center
### Data Owner Country/Reg…
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Hi all,
This is such an awesome review, and i'd love to use it as a basis for teaching, but i've had to jump back-and-forth through sections, as the current structure doesn't flow as naturally for a …
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Hi @UCDNJJ ,
Regarding the cell type annotation table, I have two questions:
(1). In table "HMBA_Human_BG_annotation", you only provided marker genes for the level 4 cluster (Group). The marker ge…
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Hi Yasin,
I am trying the Maple package on new data, and just wondering is there any code support to re-train and test the model on new dataset in general.
Thank you!
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Despite being told that this wasn't important or possible to add forwarding information for deleted identifiers when reported it, PubMed now addresses this issue by providing forwarding links. This is…
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Preferred Term: single-nucleus methylcytosine and transcriptome sequencing assay
Synonyms: snmCT-seq
Definition: A multiomic method to measure the cytosine DNA methylation and gene expression signat…
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Configuration file: db_main.toml
Description: miRDB is an online database for miRNA target prediction and functional annotations.
```toml
[db_mirdb]
source_url = "http://mirdb.org/download/miRDB…
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I have been looking into using the RNA-seq data but have some questions on the gene annotations for the V2-RNA-seq data that I get from running your GDC-prepare-function.
How do the 21022 genes tha…
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