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AllenInstitute
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scrattch.taxonomy
Allen Institute Taxonomy building R package
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Additional TO DO items
#34
jeremymiller
opened
1 week ago
1
Updates to fix mappings and dendrogram input
#33
jeremymiller
closed
6 days ago
0
Inkar mode fix
#32
inkarkapen
closed
6 days ago
0
Update createShiny.R to work with Sifter
#31
jeremymiller
closed
1 month ago
0
"BN LAMP5" is "CGE GABA" or "MGE GABA"?
#30
DingWB
opened
1 month ago
1
Questions about the HMBA_Human_BG_annotation
#29
DingWB
closed
2 weeks ago
11
Some Excitatory neuron subtypes are missing in cell type taxonomy?
#28
DingWB
closed
2 months ago
7
Inkar mapmycells comments
#27
inkarkapen
closed
2 months ago
1
updated docker version
#26
inkarkapen
closed
3 months ago
0
added the capability to specify a log file path
#25
zrlewis
closed
3 months ago
1
python set up update in zzz
#24
inkarkapen
closed
4 months ago
0
updated readme
#23
inkarkapen
closed
4 months ago
0
updated docker
#22
inkarkapen
closed
4 months ago
0
updated tutorial and fixed list error
#21
inkarkapen
closed
4 months ago
0
Refactored and added option for user provided files
#20
inkarkapen
closed
4 months ago
0
Update aligned_schema.md
#19
dosumis
closed
4 months ago
0
Adding mapmycells (build taxonomy)
#18
inkarkapen
closed
5 months ago
0
Issue with addDendrogramMarkers()
#17
xuehanci
opened
6 months ago
1
Inkar cell type mapper tutorial python
#16
inkarkapen
closed
6 months ago
0
Adding customized dendrogram in buildPatchseqTaxonomy()
#15
xuehanci
opened
7 months ago
2
Major scrattch.taxonomy update - KL divergence
#14
jeremymiller
closed
8 months ago
0
Improve ability to subsample/filter for creating child taxonomies
#13
jeremymiller
opened
8 months ago
0
Save all original cells in uns.cellSet
#12
xuehanci
closed
7 months ago
0
(Non-breaking) issues with loadTaxonomy and checkTaxonomy
#11
jeremymiller
opened
9 months ago
1
Extend AIT format to hold HANN (python) files
#10
UCDNJJ
closed
2 months ago
0
Automated taxonomy standards report from AIT format.
#9
UCDNJJ
opened
9 months ago
0
Fix AWS links for public taxonomies - Nelson / Jeremy / Inkar
#8
UCDNJJ
closed
2 months ago
0
PatchSeq tutorial updates.
#7
UCDNJJ
closed
2 months ago
0
Integrate new taxonomy standards into anndata `.uns`
#6
UCDNJJ
opened
9 months ago
0
Record in `.uns` all cell identifiers.
#5
UCDNJJ
closed
2 months ago
0
Inkar add hodge dataset
#4
ikapen-alleninst
closed
10 months ago
0
Combining filtering and subsampling in addDendrogramMarkers() in buil…
#3
ikapen-alleninst
closed
1 year ago
0
added a check in buildTaxonomy.R to look for "sample" column name
#2
ikapen-alleninst
closed
1 year ago
1
Merge windows file path (and other changes) into dev
#1
jeremymiller
closed
1 year ago
0