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Hi
when I run sourmash lca gather with a metagenome-assembled sample, like this:
sourmash lca gather final.contigs.10-3.fa.sig genbank-k31.lca.json
I got an error:
loaded 1 LCA databases. ksize=3…
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do we want to mention the stable hash system of Scaled MinHash for unknowns in this paper, or save it for MAGsearch paper/other stuff?
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per #1159
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Hi, I try to build my SBT database, but I get some problems.
There is my command below:
1. I use `computes` to saves signatures for NCBI sequence.
`find . -name '*' | xargs sourmash compute --outp…
J-I-P updated
3 years ago
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In Results section [Scaled MinHash sketches support efficient indexing for large-scale containment queries](https://github.com/dib-lab/2020-paper-sourmash-gather/blob/e4b195539946e1147b34636b2b5b44485…
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Good morning!
In a fresh conda environment, I was not able to build the current `latest` branch. Below is a full log. Let me know if I am missing anything!
Thank you,
Olga
Here's the relevant ex…
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```
Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 100
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 recover_mags
1
busco_folder does not poin…
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In #1128, we are deprecating the old `max_hash` parameter in favor of the new `scaled` parameter. They can be interconverted easily with no additional information (see functions `_get_max_hash_for_sca…
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Hello,
I tried today to train a simple Classifier MLP to predict the bioactivity of a set of small molecules (not peptidomimetics of peptides). This is how I preprocess the MAP4 vectors before trai…
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Use case: Bacterial outbreak tracing.
I filter genomes using minhash to reduce the set that is subsequently modelled as outbreak (the "transmission tree").
I was surprised to learn that some gen…