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I am trying to run examples/distributed on an Amazon ec2 cluster created with Amazon's cfncluster. Running the simple example (non-distributed) works fine and properly updates the MongoDB. I have also…
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I'm trying to run JUMPg_v2.3.1.pl from the instructed directory (as said in JUMPg readme) but getting this error again "Problem in generating a JUMP database _ft_mc2_c0.fasta.mdx
Please check builddb…
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I am using `SGECluster` to submit thousands of tasks to dask workers. I want to request a feature to specify max number of tasks per worker to improve cluster usage. For example, if it takes 4 hours…
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Users of qbatch are required to format their memory specification according to how the queuing system accepts it, qbatch does no testing.
"GB" is not an accepted input format for SGE.
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The cluster integration in antsMultivariateTemplateConstruction2.sh and the like is not according to best practices for HPC style clusters. I have supported these tools on both a PBS and SLURM cluster…
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Just raising this one to track my implementation.
Few comments from the implementation
1. qdel is useful and also the meaing of Eqw in qstat list > https://www.t3.gsic.titech.ac.jp/en/node/65
2.…
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Hello,
As a possible addition to the end of the Episode 9, here are some instructions for using 'profiles' functionality for running Snakemake on the cluster (in this case specifically on Eddie …
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is there an analogous setting in future::plan for rmpi?
```r
library(parallel)
hello_world
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The `submitter` package is an independent unit of code, and can be refactored out.
Suggestion for name `cluster-submitter`
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For big-data it would really help *doit* it supported the submition of tasks using cluster-schedulers like PBS , SLURM, Torque, Sun Grid Engine (SGE) & other `qsub` like services.
For a similar fea…