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We have existing SLURM documentation here https://rapids.ai/hpc. We should migrate this to the deployment documentation here.
Create a new documentation page called `source/hpc/slurm.md` with instruc…
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**Is your feature request related to a problem? Please describe.**
I am trying to install `nix` on a SLURM HPC. The way the cluster is managed means that each lab is responsible for installing thei…
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hi everyone,
I'm successfully running Cactus through singularity container on a cluster. I've a few questions relating how to optimize parameters submitted to SLURM and possibly to Cactus itself:
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### Bug description
[This assertion](https://github.com/Lightning-AI/pytorch-lightning/blob/a6562b4ae7623acb87f35d49216f90aae2363b18/src/lightning/fabric/plugins/environments/slurm.py#L220) raises …
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**Snakemake version**
8.17
**Describe the bug**
In Snakemake 8.17 using Slurm plugin if my profile has `job: unlimited`, `cores: all`, and `max-jobs-per-second: 1` Snakemake only subm…
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### Description of the bug
When running the atac-seq pipeline on our SLURM cluster, it keeps failing at seemingly arbitrary points, with an error message saying that the process was "terminated for a…
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See http://image.diku.dk/mediawiki/index.php/New_image_cluster_setup
IMPORTANT: Check what happens to old NFS mounts: /science/home/ we need to ensure this is not just lost.
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### Describe the problem
how to use docker images offline in local cluster.
I know that a slurm based cluster can use cached docker images.
### Describe the solution you'd like
offer a way to use…
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In the [documentation](https://docs.vscentrum.be/leuven/genius_quick_start.html#running-debug-jobs) all examples use `ntasks` or `n` to specify the number of CPUs needed per GPU. This generally works …
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Context: I've got a SLURM cluster. I want to run `code tunnel` inside of interactive jobs such that users can then use the compute node for remote development. (Note, I don't want to use SSH as variab…