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https://mp.weixin.qq.com/s/QcoW8ekIG7Pr6KMf74Jp3A
ixxmu updated
2 years ago
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Hi,
I tested `palom` to register 13 images and the result overall looks really great, however, one of the images was wrongly aligned, see image below in purple. The only difference I saw with the oth…
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Hello,
First of all, thanks a lot for this package and all the documentation that you have attached with it, it have helped me a lot.
However, I still have few questions and I would like to kn…
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Hi,
I am trying perform dsb normalisation on my ADTs. However, I am encountering an issue when it comes to perform CiteSeqCount on the whitelists of the empty droplets (excluded filtered barcodes …
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HI there, first of all you guys have done some amazing work thankyou for such a great network 😊!
Now, moving on to the issue I wanted to know, how should I be training the network for PanNuke Datase…
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Dear DSB team,
Thanks so much for developing this amazing resource.
I have a question regarding batch effect correction. As specified in the preprint: "we implemented this transformation on each…
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Hi @MattPM,
we used DSB to normalize ADT counts of a CITEseq dataset (multiple timepoints per patient; DSB normalization was done for each point of time separatly) and it worked pretty well! :) .…
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Hi @MattPM,
Thank you for your work on this package - it has been a large improvement over other normalization methods. I am interested in integrating the DSB-normalized values with Seurat V4 for d…
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When slideflow is installed from a wheel, stain normalization fails with the following traceback:
```Traceback (most recent call last):
File "/usr/lib/python3.7/multiprocessing/process.py", line…
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Hello,
Thanks for your work on this package, I think that this is a serious contribution to helping resolve a lot of issues that people are having with CITE-Seq and related single-cell techniques …