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Want to use monocle2 to show the trajectory. But in the **plot_pc_variance_explained** , it showed the warning, and I can not make sure how many pc are explained. So I set the parameter **num_dim = 10…
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Hi I executed tsne using same parameters in RStudio [3.4.2] and Alteryx R module [3.5.3] and got very different results. Any thoughts? Both have same tsne package version. no other packages are involv…
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Has anyone run into issues with running TSne.jl on a cluster and returning a "Segmentation fault" error? I've run a few different datasets with TSne and some appear to be running fine on the cluster, …
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I use this command to compile from the main page:
```bash
g++ -std=c++11 -O3 src/sptree.cpp src/tsne.cpp src/nbodyfft.cpp -o bin/fast_tsne -pthread -lfftw3 -lm
```
but got a warning, and the pro…
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Hi,
Your algorithm seems great but I can't get it to work with my own data. Can you understand what's wrong?
countma[1:4,1:4]
```
> cell_0 cell_2 cell_3 cell_6
> HAL …
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**Describe the bug**
cuML's t-SNE outputs vary from run to run, even when `random_state` is used or initial embeddings are provided (and #2549 is fixed).
**Steps/Code to reproduce bug**
```py
fr…
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Hi @all,
Thanks to develop the great tools,
I encounter a pecular problem on bbknn integrated data.
i follow the workflow code to run the data integrated,the code showing below,
#
…
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Thanks for your excellent work. However, there are problems when I test with your code.
In line 6
```
from sklearn.manifold.t_sne import _joint_probabilities, _joint_probabilities_nn
```
Should i…
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Hi,
Great package. But I'm having issues converting a seurat object to h5ad file and then reading that file back in. I analyzed my data using Seurat and saved it as sc.h5ad
```
> SaveH5Seurat(…
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I'm was using this code (version 1.28.1) to bin 1.7M datapoints into hexagon bins for an online web graphic. I exported each bin's center using `hexbin$xcm` and `hexbin$ycm`; however, when I attempte…