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Dear authors,
I have read your paper and still do not have deep understanding of how to pretrain CHIEF model. My confusion is in pretraining method and want to discuss this method.
- I wish to v…
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Some filters we should probably have (going by artifacts I've observed in real data)
- Strand bias
- Variants reads mostly start or end at the same place
- Variants toward the end of homopolymers (per…
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--Hi,
how to set Vardict to detect variants with VAF ~ 1%, which parameters can increase sensitivity ?
than you --
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[The format of the issue]
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keywords:
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Hi @fenderglass and @aysegokce , this is Khi Pin. I've been trying to implement v0.1.2 in my WDL workflow (set to go public sometimes this month), but I've been running into errors where v0.1.1 had no…
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Dear professors@tianshiliu,
Recently,I am very interested in your work for lineage tracing use this SClineager package.I use your test data in the data folder，which is the coverage.txt and the …
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[The paper format]
Paper title:
Author list:
Paper link:
Code link:
[The dataset format]
Dataset title:
Dataset link:
Paper link [optional]:
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### Description
We want to update SPM12 and CAT12 to a more recent version; it probably makes sense to update both at the same time given their interdependence, and carefully test several scenarios…
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**Is your feature request related to a problem? Please describe.**
Currently, we developed many bundles in the `model-zoo` repo and developed the `ConfigParser` to load configs.
But actually we don'…
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Just recording this one here for future references (in case someone else sees this error too). It looks "random" since the same call worked many times before. I'm rerunning right now.
```sh
[cbc…