AstraZeneca-NGS VarDict issues

AstraZeneca-NGS / VarDict

VarDict

MIT License

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issues

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how to call biallele using vardict in cancer

#192 zsanli opened 1 month ago
0
Amplicon variant calling - empty file

#191 SheepwormJM opened 1 month ago
0
Discrepant MAPQ and NM values in BAM and Vardict output

#190 jkunisak opened 9 months ago
0
TYPE=Complex

#189 lmanchon opened 10 months ago
0
local realignment file

#188 j-knome opened 1 year ago
0
Output realignment for inspection

#187 bwubb opened 1 year ago
0
How is GT determined in vardict?

#186 arolni opened 1 year ago
0
How does vaf cutoff influence the result?

#185 EvaPang2022 opened 1 year ago
0
JAVA ERROR RUNNING VARDICTJAVA

#184 espelpz opened 1 year ago
0
vardict -3 parameter : get a new confused variant

#183 jiangldu opened 1 year ago
1
large indel

#182 lmanchon opened 1 year ago
0
VAF ~ 1%

#181 lmanchon opened 1 year ago
7
failed in discover one single mutation

#180 lmanchon closed 1 year ago
7
Running out of memory despite bed file

#179 lt11 closed 1 year ago
0
single mode vs paired mode

#178 melodysyue opened 2 years ago
0
java.lang.NumberFormatException: For input string

#177 LeilyR closed 2 years ago
3
Low VAF variant missing in a region with a set of mismatches (moved to java version issue)

#176 gaosong0329 opened 2 years ago
1
can't find file to <chomp>

#175 bgold04 closed 2 years ago
1
Vardict adding 1 additional count to VD "Variant Depth"

#174 BJWiley233 opened 2 years ago
0
Can we set Vardict VAF below 0.01?

#173 hanaecarrie opened 2 years ago
2
Apostrophe char in bed "name" field produces incorrect output from teststrandbias.R

#172 grafitos opened 2 years ago
0
variation different between Single Sample Mode and Single Sample Mode

#171 wangxuedong930227 closed 2 years ago
0
Error: Incorrect input detected in testsomatic.R

#170 Trandamere closed 2 years ago
0
High Disk Usage

#169 THZ34 opened 3 years ago
0
How to calculate AF？

#168 EthanW1003 opened 3 years ago
0
critical exception occurs on region: chr7:6026294-6026568, program will be stopped.

#167 asmlgkj closed 2 years ago
1
question about QUAL INFO

#166 kkamii opened 3 years ago
2
GT vardict info

#165 asmlgkj opened 3 years ago
4
a

#164 worker000000 closed 3 years ago
0
.

#163 worker000000 closed 3 years ago
0
Latest code

#162 dt1127 closed 3 years ago
1
1.91% MET variation not seen in IGV but in vardict

#161 worker000000 closed 3 years ago
11
Depth is larger than AltDepth, strange variant

#160 worker000000 opened 3 years ago
0
vardict cannot call this insertion

#159 cswph closed 3 years ago
4
interpret as AG or GA genotype to associate with pharmgkb

#158 worker000000 closed 3 years ago
1
Structural Variants

#157 GorgonVZ opened 3 years ago
0
How to interpret VarDict output in vcf format

#156 Nairobi-2020 opened 3 years ago
1
var2vcf_paired.pl excludes simultaneous mutations

#155 esamorodnitsky closed 3 years ago
1
question about high quality variant

#154 kkamiii opened 3 years ago
0
vardcit define complex variant

#153 worker000000 opened 3 years ago
2
Missing variant

#152 crispgc opened 3 years ago
0
Clarify the exact definition of PMEAN in the VCF header

#151 clintval closed 3 years ago
2
Missing genotype/format fields improperly formatted

#150 nh13 closed 4 years ago
2
Rollback to VCF 4.2

#149 PolinaBevad closed 4 years ago
0
Fixed VCF InDelLikely flag and Bias filter

#148 PolinaBevad closed 4 years ago
0
No parallelization and high time consumption

#147 rahul-yadav-supra opened 4 years ago
17
Missing Mutations

#146 qub-pete closed 4 years ago
3
Fix for issue 299 in gVCF when we have empty REF: skip such records.

#145 PolinaBevad closed 4 years ago
0
Added flags for Likely statuses

#144 PolinaBevad closed 4 years ago
8
Running on WGS samples

#143 vymao closed 4 years ago
1