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AstraZeneca-NGS
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VarDict
VarDict
MIT License
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Fix for issue 288 from Java
#142
PolinaBevad
closed
4 years ago
0
Error: Incorrect input detected in teststrandbias.R
#141
monashhf
closed
4 years ago
2
Maftools to visualize verdict results
#140
biobug16
closed
4 years ago
2
several warnings: Use of uninitialized value, Use of uninitialized value in join or string
#139
corneliabuus
closed
4 years ago
5
Disable scientific notification in R
#138
PolinaBevad
closed
4 years ago
0
VarDict reports entries where alternate is the same as reference
#137
MariusGheorghe
closed
4 years ago
9
Added version number to VCF files.
#136
PolinaBevad
closed
4 years ago
0
Issue running VarDict.
#135
shathaa92
closed
4 years ago
13
Option to disable 3' shift (SHIFT3) for complex variants
#134
andurill
opened
4 years ago
6
how can I select complex variant from the result of vardict
#133
worker000000
closed
4 years ago
2
Warning message regarding Vardict
#132
SuhanC
closed
4 years ago
5
Fixed issue 272 from Java: zero deletion in markDUPSV
#131
PolinaBevad
closed
5 years ago
0
Fixed issue 265 from Java: missed position in pileup mode
#130
PolinaBevad
closed
5 years ago
0
Fixed issue 267 Java: IUPAC ambiguity codes in reference
#129
PolinaBevad
closed
5 years ago
0
Fixed issue 286: substr error for short query quality string and nM for STAR aligner
#128
PolinaBevad
closed
5 years ago
0
Fixed issue with AMP in allelle. Added chimeric changes.
#127
PolinaBevad
closed
5 years ago
0
question about -P for the read position filter
#126
dauss75
closed
5 years ago
0
is vardict fit for germline calling?
#125
wentgithub
closed
5 years ago
13
I have true sets, which vardict call high FP in tumor-only
#124
wentgithub
closed
5 years ago
1
meet this error **"Incorrect input detected in testsomatic.R"**,
#123
wentgithub
closed
5 years ago
9
Fixed issue 253 from Java repository
#122
PolinaBevad
closed
5 years ago
0
Added fix for issue 242 (DEL SV)
#121
PolinaBevad
closed
5 years ago
0
Added options for MSI thresholds
#120
PolinaBevad
closed
5 years ago
1
WIP: Adaptor skipping changes in findconseq
#119
PolinaBevad
closed
3 years ago
0
Fix issue 243 from Java repository: cigar in 3 indels
#118
PolinaBevad
closed
5 years ago
0
Fixes for VCF version 4.3. in single and paired mode
#117
PolinaBevad
closed
5 years ago
0
MSI is a float not an integer
#116
AlisonKennedy
closed
5 years ago
2
Fixed reference bases at the end of reference
#115
PolinaBevad
closed
5 years ago
0
Avoid warnings for uninitialized value
#114
PolinaBevad
closed
5 years ago
0
Reported Allele Frequency AF > 1
#113
annaquaglieri16
opened
5 years ago
2
Fixed issue 226 (Java) repeat variant lines
#112
PolinaBevad
closed
5 years ago
0
Fixed SV for VCF merge.
#111
PolinaBevad
closed
5 years ago
0
Scripts for parallel run of R and pl scripts
#110
PolinaBevad
closed
5 years ago
0
WIP: Added multi-allelic processing for amplicon mode
#109
PolinaBevad
opened
5 years ago
1
Update README.rst
#108
popucui
closed
5 years ago
1
Fixed issues 28 (option -o) and 82 (boundary conditions)
#107
PolinaBevad
closed
5 years ago
0
Fixed issue 204: wrong calculations of MAPQ
#106
PolinaBevad
closed
5 years ago
0
Added cut of float part for almost zeros
#105
PolinaBevad
closed
5 years ago
0
var2vcf_valid added generation of ##contig tags
#104
gitshadowhub
closed
5 years ago
0
Fixed tab for pileup mode.
#103
PolinaBevad
closed
5 years ago
0
Fixed X and Y chromosome recognition in pl scripts
#102
PolinaBevad
closed
5 years ago
0
Fixes of issues 189, 192,193, 195 from VarDictJava repository
#101
PolinaBevad
closed
5 years ago
0
teststrandbias.R column counting error
#100
tbmorrison
closed
5 years ago
2
vardic from conda errror
#99
bioinfo-dirty-jobs
closed
5 years ago
2
Added fixes for sorts
#98
PolinaBevad
closed
5 years ago
0
problem in running vardict
#97
mavino
closed
5 years ago
8
Added processing of multi-allelic cases
#96
PolinaBevad
closed
5 years ago
0
Fix for realignins offset (substr outside of string error)
#95
PolinaBevad
closed
5 years ago
0
Better support of gVCF and VCF4.3 format for AD and AF keys
#94
clintval
closed
5 years ago
2
Fixed rrc count on direction and zero deletion after modify cigar
#93
PolinaBevad
closed
5 years ago
0
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