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Hi,
I keep getting an error while installing jcvi, when using both python3 -m pip install jcvi and python3 -m pip install -e ./ in the cloned git repository. The error is the following:
```
[...]
…
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Next steps toward making the platform more sustainable and easier to manage going forward. Listed here in (approximate) logical order of completion.
**Remove GeoServer dependency**
- [x] Serve C…
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Hey,
I have done a de novo assembly to produce contigs. I then used RagTag to scaffold the contigs into Scaffolds using a reference genome as a guide. I then annotated the scaffolded assembly. My s…
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I can try to figure out how to replicate this, but essentially the numbering for the GCPs can sometimes get off where it won't register either a user-clicked point on the scanned image/web map, which …
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- In some cases, the cgpv.init callback is run before the layers have finished to load. This PR will correct the problem.
- The callback now have a mapId parameter that tells which map has finished l…
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Hi,
I'm trying to build a synteny map using ALLMAPS, it's a while that I didn't perform this analysis. I used to run `jcvi.compara.catalog ortholog` between the two species. But now I'm getting thi…
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Hi,
I am trying to scaffold a genome using a genetic map but get an error in the logging process that I cannot find the cause of.
Could you please shed some light on it?
```
python -m jcvi.ass…
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[GEO_Updates.docx](https://github.com/Canadian-Geospatial-Platform/geo.ca/files/9470415/GEO_Updates.docx)
email sent September 1st, 2022
Please update map titles and descriptions for Mykhailo’s thre…
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Hi,
When generating the plots from ALLMAPS I've notice that for chromosomes with a odd number of scaffolds (when n >1), that the last scaffold patch is always white, rather than grey as should be e…
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Is it possible to access jump history, similar to what `jumps` command shows, from `${{ lf commands }}` ?
I am trying to write a function that would feed the jump history to fzf, and then go to the…