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tanghaibao
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jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
BSD 2-Clause "Simplified" License
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报错：Segmentation fault
#683
monica11w
opened
2 days ago
0
Remove comment lines while parsing seqids (thanks @Pedicularis1kib, #676)
#682
tanghaibao
closed
3 days ago
0
Dev
#680
tanghaibao
closed
1 week ago
0
python3 -m jcvi.compara.catalog ortholog这步报错
#679
Sherry520
opened
2 weeks ago
2
change back to macos-latest
#678
tanghaibao
closed
2 weeks ago
0
Update README and citation section
#677
tanghaibao
closed
2 weeks ago
0
It reported "ERROR Size of `scaffold_19` is empty. Please check"
#676
YanCheer
closed
7 hours ago
4
don't make index
#675
tanghaibao
closed
3 weeks ago
0
don't brew install freetype
#674
tanghaibao
closed
3 weeks ago
0
install error of jcvi
#673
ma2o-3
closed
3 weeks ago
2
Replace super(Class, self) => super()
#672
tanghaibao
closed
4 weeks ago
0
Visualization of DNA-level Collinearity Using Mummer Data
#671
saltyduckegg
opened
1 month ago
2
Add --filter sam
#670
tanghaibao
closed
1 month ago
0
Add "otsu" method to GRABSEEDS
#668
tanghaibao
closed
1 month ago
0
TypeError: expected a sequence of integers or a single integer, got '69.222553'
#667
karthickbrlab
closed
1 month ago
9
Replace percent with % in assembly.kmer
#666
tanghaibao
closed
1 month ago
0
Don't update string when notex=True
#665
tanghaibao
closed
1 month ago
0
Test ALLMAPS
#664
tanghaibao
closed
1 month ago
0
Test GRABSEEDS
#663
tanghaibao
closed
1 month ago
0
How to modify picture parameters？如何修改共线性图片的参数（调整字体大小，pdf的大小）
#662
MR-D-CJ
closed
1 month ago
2
Allow testing of karyotype and synteny
#661
tanghaibao
closed
1 month ago
0
Dev
#660
tanghaibao
closed
1 month ago
0
Fix regression
#658
tanghaibao
closed
1 month ago
0
Usability fix
#657
tanghaibao
closed
2 months ago
0
Remove optparse (deprecated) and move over to argparse
#656
tanghaibao
closed
2 months ago
0
Landscape
#655
tanghaibao
closed
2 months ago
0
Deprecate unused code
#654
tanghaibao
closed
2 months ago
0
Run black
#653
tanghaibao
closed
2 months ago
0
Deprecations
#652
tanghaibao
closed
2 months ago
0
Add JCVI demo script
#651
tanghaibao
closed
2 months ago
0
Cleanup geneticmap.heatmap() and hic.heatmap()
#650
tanghaibao
closed
2 months ago
0
Grabseeds
#649
tanghaibao
closed
2 months ago
0
What about more than 100 Species?
#648
Z1997B
opened
2 months ago
5
Grabseeds
#647
tanghaibao
closed
2 months ago
0
Pedigree
#646
tanghaibao
closed
2 months ago
0
Qusetion about Microsynteny
#645
Toney823
closed
2 months ago
2
Fix test_obo.py
#644
tanghaibao
closed
2 months ago
0
Support blast and diamond blastp for ortholog identification
#643
Tong-Chen
closed
2 months ago
0
Can the number of genome duplication events be determined by highlighting the proportion of collinear gene blocks?
#642
XXH123a
closed
2 months ago
3
Add biotype
#641
tanghaibao
closed
2 months ago
0
Issues in Microsynteny visualization
#640
lvyunyunSCI
opened
2 months ago
1
blocks mapping to the chromosome without those blocks
#639
123jjhy
opened
3 months ago
4
what is command for calculate ka ks ka/ks
#637
XuewenWangUGA
opened
3 months ago
1
在jcvi.graphics.synteny 这个脚本绘图，发现block阴影很淡。
#636
yuanhuanhahahaha
opened
3 months ago
0
block size information
#635
Wanliwill
closed
2 months ago
1
failed to extract correct .bed file from gff file which is generated from prokka : python -m jcvi.formats.gff bed
#634
yyyuechen
closed
1 day ago
3
Add "Liberation Sans" as a supported font (thanks @alpapan, #629)
#633
tanghaibao
closed
4 months ago
0
Microsynteny 微共线性分析怎么修改线的颜色和粗细
#631
isunshine-cc
opened
4 months ago
0
lifted anchors: format reading issue?
#630
alpapan
closed
3 months ago
1
Dotplots: Allow for free fonts
#629
alpapan
closed
4 months ago
1
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