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**Describe what enhancement you'd like to see.**
All CCBR pipelines need to prepare for the transition to Biowulf8. Check module list and update versions as needed, or create new issues for modules n…
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### Operating System
Windows 10
### Other Linux
Rocky Linux release 8.7 (Green Obsidian)
### Workflow Version
v1.10.1-g79ddc44
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Vers…
sfcs updated
9 months ago
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We are not sure if the newly created references work fully. To my knowledge, there are always some issues when switching to new references. I will test them with my Snakemake pipeline. It will take …
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Hi pgsc_calc team!
I had recently started a discussion about using pgsc_calc within cloud VM environments that have limited permissions built in (Terra, All of Us). Since then, I have just tried to…
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### Description of the bug
Still trying to get --run_ancestry working, now encountering a new error during plink command execution:
```
FATAL: container creation failed: image driver mount fail…
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Error run into by Ayslan on biowulf the first time he tried to run RENEE:
```sh
Failed to pull singularity image from docker://nciccbr/ccbr_rseqc_4.0.0:v1.0:
FATAL: While making image from oci …
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I ran your Vineela's tiny test data set from the shared folder and got an error in pulling nf-core-bclconvert-4.0.3.img. This might not be something Vineela will be able to fix, just let you know the …
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- [x] Get scripts from Khanlab ... append to pipeline
- [ ] Explore applicability of existing MOTIF enrichment rules/scripts from CCBR ChipSeq and ASAP pipelines
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Release with:
- [x] PE support (#24)
- [x] pre-peak calling QC + peak calling + some post-peak calling QC (#2, #30, #31, #94)
- [x] revisit #64 ... install v0.2.0 under `/data/CCBR_Pipeliner/Pipeli…
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- [x] add min_reads to bam generation
- [x] remove BSJ based on this criteria:
- 150 min 5kb max for virus
- 150 min no max for human
- [x] #49