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A merged bam file for gDNA alignments is still created even if there are only 1 input gDNA sample
This is presumably due to the input spec. for blobtools
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## User story
>As a website user
>I want to visualise and interact with an assembled genome
>So that I get better perspective on the genome
### Acceptance criteria
>Given
>When
>Then
## …
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Dear all,
I have recently acquired many HiFi libraries through a ultra-low insert library including PCR protocol from a single metazoan specimen. I followed the recommended pre-processing steps and…
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ml hpc-env/8.3
ml BlobToolKit/3.3.4-GCCcore-8.3.0
ml Python/3.7.4-GCCcore-8.3.0
BASE=/user/asga9989/Gills/1_contiging/trim
META=$BASE/minimap2/meta_test12.csv
LINES=$(head $META -n $SLURM_ARRAY…
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I would like to know all the possible value options for the `blobtools filter --param key=value`. Is there a document about it? Below is the current help. While I see the `blobtools filter --param len…
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After a while of figuring out how to run blobtools I managed to go successfully through the pipeline except for the blobtools view.
The validate_dataset.log within the view only states this:
NOT V…
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I am trying to understand how to use the `blobtools filter` command running the [examples](https://github.com/blobtoolkit/blobtoolkit#example-commands).
May I ask you a question? How to prepare or …
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Can any one please help me which output files from blobtools2 I can use to do plots like this one which I found in biostars
I need to have statistics of what I have there and be able to detect co…
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Hi,
First, I really appreciate your development and maintaining blobtoolkit software which is amazing tool!
I wanted to use blobtoolkit viewer (https://blobtoolkit.genomehubs.org/blobtools2/blobto…
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Hi
I am attempting to run:
docker run -it --rm --name btk \
-v /Volumes/GoogleDrive/Shared\ drives/HauserLab/gregarine/blobtoolkit/datasets:/blobtoolkit/datasets \
-v /Volu…