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Similar to https://github.com/spinalcordtoolbox/spinalcordtoolbox/issues/3612, this issue is used to keep track of progress on feedback/ideas received from the 2021 SCT Course:
### Planning/organiz…
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Hi !
I'm trying to register anatomical T1 to diffusion b0 image using sdcflows version 2.1.1, with the Syn option as I don't have any fieldmap nor b0 with opposite phase encoding.
I affine regis…
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I'm running qsiprep with --recon-only using docker.
I noticed that when the docker command gets executed, both the -w as well as the --bids-filter-file sometimes revert to the default value despite o…
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Thanks for another amazing addition to the ggseg toolset, getting close to never having to use anything else for plotting my brains. For the tract I was wondering whether there are any extensions of t…
rb643 updated
2 years ago
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`sct_dmri_moco` is crashing on the following error: `itk::ERROR: MattesMutualInformationImageToImageMetricv4`
https://github.com/valosekj/dcm-brno/blob/f8fedacbb7998eda66f63f6ad67e48ae45d42dce/scri…
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Hi,
I have some noddi data acquired at bvalues of 700 and 2000. They were acquired in separate sequences one after another - they have been processed identically for distortion and eddy corrections…
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Since the BEP brings together a lot of diffusion domain-specific expertise, I suggest the team can develop a consensus on the (potentially ambiguous) existing diffusion details of the BIDS specificati…
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You have done almost everything correct in `dMRI/thalamic_connectome.sh`!!
Well done!
All the convert.txt and label.txt file pairs are all correct and the sequence of stuff! So this should work.
…
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### Summary
I forked the NiPype repo and followed the requirement of running `make check-before-commit` before submitting a PR but I got the output below ending with an error.
I am in a conda en…
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I have executed process_data.sh on data-multi-subject and have got following message. Would you like to see full log files? Brief debug summary is below.
```
Your batch completed but some subjects…